Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SSAL_RS08680 Genome accession   NC_017594
Coordinates   1868631..1870727 (-) Length   698 a.a.
NCBI ID   WP_014633613.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1863631..1875727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS08655 (Ssal_01901) - 1865173..1865484 (-) 312 WP_002886559.1 urease subunit beta -
  SSAL_RS08660 (Ssal_01902) - 1865496..1865798 (-) 303 WP_002886558.1 urease subunit gamma -
  SSAL_RS08665 (Ssal_01903) - 1865823..1866338 (-) 516 WP_002886548.1 AmiS/UreI family transporter -
  SSAL_RS08670 (Ssal_01904) - 1866746..1868137 (+) 1392 WP_014633611.1 DUF4153 domain-containing protein -
  SSAL_RS08675 (Ssal_01905) - 1868189..1868521 (-) 333 WP_014633612.1 DUF805 domain-containing protein -
  SSAL_RS08680 (Ssal_01906) comA 1868631..1870727 (-) 2097 WP_014633613.1 peptide cleavage/export ABC transporter Regulator
  SSAL_RS08685 (Ssal_01907) comR 1870902..1871801 (-) 900 WP_045001949.1 helix-turn-helix transcriptional regulator Regulator
  SSAL_RS08690 (Ssal_01908) - 1871982..1872632 (-) 651 WP_045001950.1 phosphatase PAP2 family protein -
  SSAL_RS08695 (Ssal_01909) - 1872635..1873192 (-) 558 WP_013990037.1 ECF transporter S component -
  SSAL_RS08700 (Ssal_01910) - 1873501..1874010 (-) 510 WP_013990036.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  SSAL_RS08705 (Ssal_01911) trkA 1874288..1875637 (+) 1350 WP_013990035.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78413.39 Da        Isoelectric Point: 9.1873

>NTDB_id=49425 SSAL_RS08680 WP_014633613.1 1868631..1870727(-) (comA) [Streptococcus salivarius 57.I]
MSKYPYISQVDQRDCGVAALAMILKHYGSSYSLAYLRELAQTSREGTSALGLVEVAKQLGLETQAIRADLDLFKQESLSY
PFIAHVVKEGGLQHYYTVFGQIKGKLVIGDPDPSKKVIKMPLEEFAKEWTGVALFFVPGETYTKYKEDVPGLLSFLPILF
RRKGLIAVIVLLSFLVTLVNIIGSYYLQSIIDRLIPQEAYTLLTMISLGLCISYLAQQVFTFFKDYLLHRLGNYLSIAVI
LPYIKHVLSLPISFFSSRRTGEITSRFGDANTIIDALASTILSIFLDVTIVMTLAVALILQNQSLFVMTLTVVPLYVLII
LAFYKLFEKENYQLMEANSQVNTAVIDDLRGIETLKSLRVEERRYQEIEVKFHDYLKKSLSKAKWQLTQDGLKTGVQLVS
NVFILWYGAQLVMEGQLSAGQLITYNMLLNYFTTPLINIINLQSKIQQAKVANNRLQEVYVVDKEEKGKLKEFSFKQLAL
KGVSHRFSYQQETLSKIDLTIHKGEKIALMGKSGSGKTTLAKMLSGYYTKSSGHVTLDKDAIGHAELRQMVTYVPQQTYV
FTGTILENLLLGFEGEVDEKKLLKVCQQADILEDIQKMPLGFQTQVSEDGGLSGGQKQRLAIARALLSKQPILIFDEATS
GLDSDTESRVMANLAKIKRTMIFIAHRNSVRQHVSRVVTMGGGQIESDSPNFNPFQFI

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=49425 SSAL_RS08680 WP_014633613.1 1868631..1870727(-) (comA) [Streptococcus salivarius 57.I]
ATGTCAAAATATCCATATATTTCACAGGTTGATCAGCGTGATTGTGGTGTCGCTGCCTTGGCCATGATTCTTAAACACTA
TGGTTCATCTTATAGTTTAGCTTATTTGCGGGAGTTGGCTCAGACTTCTCGTGAAGGCACTTCTGCGCTTGGTTTGGTTG
AAGTGGCCAAGCAGTTGGGCCTTGAAACTCAGGCTATTCGTGCGGATTTAGACTTGTTTAAACAAGAAAGCCTATCTTAT
CCTTTTATTGCACATGTGGTTAAAGAAGGTGGATTGCAACATTATTATACGGTGTTTGGTCAAATCAAGGGGAAGCTTGT
TATTGGTGATCCAGATCCTAGCAAGAAGGTCATTAAAATGCCCTTAGAGGAGTTTGCCAAAGAGTGGACGGGAGTTGCTC
TCTTTTTTGTTCCAGGAGAAACTTACACTAAATACAAAGAAGATGTGCCTGGGCTTCTTTCATTTTTACCAATTTTGTTT
CGTCGTAAGGGTTTGATTGCAGTTATTGTCTTGTTAAGTTTTCTAGTGACCCTTGTTAATATTATTGGTTCTTATTATTT
GCAATCTATTATTGACCGCTTGATTCCTCAGGAGGCCTACACTCTTCTAACCATGATTTCGCTAGGCCTATGTATCTCTT
ATCTAGCTCAACAAGTATTTACTTTTTTCAAAGATTATCTTCTACATCGATTGGGGAATTACTTGTCCATTGCTGTCATT
CTTCCTTATATTAAGCATGTCCTTTCCTTACCTATTAGTTTCTTTAGTTCACGTCGTACTGGTGAAATAACGTCACGTTT
TGGCGATGCTAACACTATTATCGATGCTCTAGCTTCAACGATTTTATCGATTTTCCTAGATGTGACCATTGTGATGACTC
TAGCTGTGGCTCTTATTTTACAAAATCAGTCACTTTTTGTGATGACTCTCACGGTAGTGCCTCTTTATGTTTTAATCATT
TTGGCCTTCTATAAGCTTTTTGAAAAGGAAAATTATCAATTGATGGAGGCAAATAGTCAGGTCAATACCGCTGTTATTGA
TGATTTGCGAGGCATTGAAACCTTAAAATCCTTGAGAGTTGAAGAAAGACGCTATCAGGAAATTGAGGTGAAATTCCATG
ACTATTTGAAGAAGTCTTTGTCTAAGGCCAAGTGGCAATTAACACAGGATGGTTTAAAGACAGGGGTTCAGTTAGTTTCC
AATGTCTTTATCCTATGGTATGGGGCACAATTGGTCATGGAAGGACAGCTATCTGCAGGTCAGTTGATTACCTATAATAT
GTTGCTGAATTATTTTACAACTCCTTTAATTAATATTATCAATCTCCAATCCAAAATTCAGCAAGCCAAAGTAGCCAATA
ATCGTCTTCAAGAAGTTTATGTTGTGGATAAGGAAGAAAAAGGAAAACTTAAAGAGTTTTCTTTTAAACAACTTGCTCTT
AAAGGAGTCAGTCACCGTTTTAGTTATCAGCAAGAGACGCTTAGTAAGATTGATTTAACGATTCATAAGGGTGAGAAAAT
CGCCCTCATGGGTAAAAGTGGATCTGGGAAAACAACCTTAGCGAAAATGTTGTCAGGTTATTACACAAAATCTAGTGGTC
ATGTAACCCTAGATAAAGATGCTATTGGCCATGCGGAGTTACGTCAAATGGTGACTTATGTTCCCCAGCAGACCTATGTG
TTTACAGGAACCATTTTAGAAAATCTGCTATTAGGATTTGAAGGAGAAGTTGACGAGAAAAAGCTCCTTAAGGTATGCCA
ACAAGCTGATATCTTAGAGGATATTCAAAAAATGCCACTAGGTTTTCAGACCCAAGTATCTGAGGATGGTGGTCTATCTG
GTGGTCAAAAACAACGCTTGGCGATAGCGAGGGCCCTCTTGTCCAAGCAGCCTATCTTGATTTTTGACGAAGCTACCAGT
GGTCTCGATAGTGATACTGAAAGCAGGGTCATGGCTAATCTTGCTAAGATTAAACGAACAATGATTTTTATTGCTCACCG
CAATAGTGTCCGTCAACATGTCAGCCGTGTAGTGACCATGGGGGGTGGTCAGATTGAGTCGGACAGTCCTAATTTCAATC
CATTCCAGTTTATTTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(3-139)

ABC transporter transmembrane region (ABC_membrane)

(167-436)

ABC transporter (ABC_tran)

(494-640)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.98

98.997

0.534
  comA Streptococcus gordonii str. Challis substr. CH1

53.305

99.713

0.532
  comA Streptococcus mitis NCTC 12261

53.546

98.997

0.53
  comA Streptococcus pneumoniae Rx1

53.401

98.997

0.529
  comA Streptococcus pneumoniae D39

53.401

98.997

0.529
  comA Streptococcus pneumoniae R6

53.401

98.997

0.529
  comA Streptococcus pneumoniae TIGR4

53.256

98.997

0.527
  comA/nlmT Streptococcus mutans UA159

50.145

98.854

0.496

Multiple sequence alignment