NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	IHV08_RS18265	Genome accession	NZ_CP062497
Coordinates	3504237..3504830 (+)	Length	197 a.a.
NCBI ID	WP_003228214.1	Uniprot ID	A0A199WEF2
Organism	Bacillus subtilis strain CV16
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3499237..3509830

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHV08_RS18235 (IHV08_18235)	psmA	3499492..3499827 (+)	336	WP_014480966.1	SMR family transporter	-
IHV08_RS18240 (IHV08_18240)	psmB	3499827..3500147 (+)	321	WP_003228222.1	QacE family quaternary ammonium compound efflux SMR transporter	-
IHV08_RS18245 (IHV08_18245)	yvdQ	3500183..3500695 (-)	513	WP_003243249.1	DUF3231 family protein	-
IHV08_RS18250 (IHV08_18250)	cotNP	3500947..3502290 (-)	1344	WP_003228217.1	FAD-binding oxidoreductase	-
IHV08_RS18255 (IHV08_18255)	cotR	3502646..3503608 (+)	963	WP_015251166.1	sporulation hydrolase CotR	-
IHV08_RS18265 (IHV08_18265)	clpP	3504237..3504830 (+)	594	WP_003228214.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
IHV08_RS18270 (IHV08_18270)	pgmB	3504892..3505566 (-)	675	WP_048655002.1	beta-phosphoglucomutase	-
IHV08_RS18275 (IHV08_18275)	malL	3505563..3507248 (-)	1686	WP_192858031.1	oligo-1,6-glucosidase	-
IHV08_RS18280 (IHV08_18280)	mdxK	3507241..3509514 (-)	2274	WP_192858465.1	maltose phosphorylase	-

Sequence

Protein

Download Length: 197 a.a. Molecular weight: 21682.00 Da Isoelectric Point: 4.9416

                                >NTDB_id=490475 IHV08_RS18265 WP_003228214.1 3504237..3504830(+) (clpP) [Bacillus subtilis strain CV16]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDKK

Nucleotide

Download Length: 594 bp

                                >NTDB_id=490475 IHV08_RS18265 WP_003228214.1 3504237..3504830(+) (clpP) [Bacillus subtilis strain CV16]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA

TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG

AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC

ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCCTGCTTGCAGCCGG

CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCACTTGGCGGTGCGCAAGGTCAAGCGA

CAGAAATTGAAATTGCTGCGAAACGCATTCTATTGCTTCGTGACAAATTAAACAAAGTCCTAGCTGAACGTACTGGCCAG

CCGCTTGAAGTGATCGAACGTGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA

CAAAATTTTGACTCACACAGAAGACAAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A199WEF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	100	100	1
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.617	95.431	0.655
clpP	Streptococcus thermophilus LMG 18311	58.163	99.492	0.579
clpP	Streptococcus thermophilus LMD-9	58.163	99.492	0.579
clpP	Streptococcus pneumoniae D39	57.812	97.462	0.563
clpP	Streptococcus pneumoniae Rx1	57.812	97.462	0.563
clpP	Streptococcus pneumoniae R6	57.812	97.462	0.563
clpP	Streptococcus pneumoniae TIGR4	57.812	97.462	0.563
clpP	Lactococcus lactis subsp. cremoris KW2	57.895	96.447	0.558
clpP	Streptococcus pyogenes JRS4	56.122	99.492	0.558
clpP	Streptococcus pyogenes MGAS315	56.122	99.492	0.558
clpP	Streptococcus mutans UA159	54.822	100	0.548
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.789	96.447	0.538

Detailed information NTG0490475