Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IF770_RS13855 Genome accession   NZ_CP062401
Coordinates   2782986..2783456 (+) Length   156 a.a.
NCBI ID   WP_000934762.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_098     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2769377..2791155 2782986..2783456 within 0


Gene organization within MGE regions


Location: 2769377..2791155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF770_RS13745 (IF770_13680) lukH 2769377..2770432 (+) 1056 WP_000791411.1 bi-component leukocidin LukGH subunit H -
  IF770_RS13750 (IF770_13685) lukG 2770454..2771470 (+) 1017 WP_000595392.1 bi-component leukocidin LukGH subunit G -
  IF770_RS13755 (IF770_13690) sph 2771708..2772538 (-) 831 Protein_2676 sphingomyelin phosphodiesterase -
  IF770_RS13760 (IF770_13695) - 2772589..2773626 (-) 1038 WP_000857176.1 site-specific integrase -
  IF770_RS13765 (IF770_13700) - 2773734..2774348 (+) 615 WP_000191456.1 hypothetical protein -
  IF770_RS13770 (IF770_13705) - 2774345..2774491 (-) 147 WP_001013104.1 hypothetical protein -
  IF770_RS13775 (IF770_13710) - 2774527..2774709 (-) 183 WP_000705240.1 hypothetical protein -
  IF770_RS13780 (IF770_13715) - 2774909..2775628 (-) 720 WP_000358221.1 XRE family transcriptional regulator -
  IF770_RS13785 (IF770_13720) - 2775770..2775988 (+) 219 WP_001198673.1 helix-turn-helix transcriptional regulator -
  IF770_RS13790 (IF770_13725) - 2776003..2776311 (+) 309 WP_001153965.1 hypothetical protein -
  IF770_RS13795 (IF770_13730) - 2776468..2777220 (+) 753 WP_001148641.1 phage antirepressor KilAC domain-containing protein -
  IF770_RS13800 (IF770_13735) - 2777236..2777430 (+) 195 WP_001148852.1 hypothetical protein -
  IF770_RS13805 (IF770_13740) - 2777425..2777781 (-) 357 WP_000768245.1 DUF2513 domain-containing protein -
  IF770_RS13810 (IF770_13745) - 2777831..2778022 (+) 192 WP_000389906.1 hypothetical protein -
  IF770_RS13815 (IF770_13750) - 2778024..2778251 (-) 228 WP_000801108.1 hypothetical protein -
  IF770_RS13820 (IF770_13755) - 2778310..2778630 (+) 321 WP_001120935.1 DUF771 domain-containing protein -
  IF770_RS13825 (IF770_13760) - 2778627..2778788 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  IF770_RS13830 (IF770_13765) - 2778881..2779141 (+) 261 WP_000291489.1 DUF1108 family protein -
  IF770_RS13835 (IF770_13770) - 2779150..2779413 (+) 264 WP_001205732.1 hypothetical protein -
  IF770_RS13840 (IF770_13775) - 2779410..2781365 (+) 1956 WP_048519603.1 AAA family ATPase -
  IF770_RS13845 (IF770_13780) - 2781367..2782287 (+) 921 WP_000138475.1 recombinase RecT -
  IF770_RS13850 (IF770_13785) - 2782368..2782985 (+) 618 WP_072353921.1 MBL fold metallo-hydrolase -
  IF770_RS13855 (IF770_13790) ssbA 2782986..2783456 (+) 471 WP_000934762.1 single-stranded DNA-binding protein Machinery gene
  IF770_RS13860 (IF770_13795) - 2783486..2784379 (+) 894 WP_000148327.1 DnaD domain-containing protein -
  IF770_RS13865 (IF770_13800) - 2784386..2784604 (+) 219 WP_000338527.1 hypothetical protein -
  IF770_RS13870 (IF770_13805) - 2784613..2785068 (+) 456 WP_000401965.1 RusA family crossover junction endodeoxyribonuclease -
  IF770_RS13875 (IF770_13810) - 2785081..2785449 (+) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  IF770_RS13880 (IF770_13815) - 2785453..2785695 (+) 243 WP_000131381.1 phi PVL orf 51-like protein -
  IF770_RS13885 (IF770_13820) - 2785710..2785961 (+) 252 WP_001065046.1 DUF1024 family protein -
  IF770_RS13890 (IF770_13825) - 2785951..2786124 (+) 174 WP_000028424.1 hypothetical protein -
  IF770_RS13895 (IF770_13830) - 2786150..2786407 (+) 258 WP_031866878.1 hypothetical protein -
  IF770_RS13900 (IF770_13835) - 2786408..2786569 (+) 162 WP_000889682.1 hypothetical protein -
  IF770_RS13905 (IF770_13840) - 2786584..2787117 (+) 534 WP_001061838.1 dUTPase -
  IF770_RS13910 (IF770_13845) - 2787154..2787399 (+) 246 WP_001282074.1 hypothetical protein -
  IF770_RS13915 (IF770_13850) - 2787396..2787602 (+) 207 WP_000195803.1 DUF1381 domain-containing protein -
  IF770_RS13920 (IF770_13855) - 2787599..2787985 (+) 387 WP_000592201.1 hypothetical protein -
  IF770_RS13925 (IF770_13860) - 2787982..2788131 (+) 150 WP_000595305.1 transcriptional activator RinB -
  IF770_RS13930 (IF770_13865) - 2788290..2788940 (+) 651 WP_001005262.1 hypothetical protein -
  IF770_RS13935 (IF770_13870) - 2788940..2789140 (+) 201 WP_000265041.1 DUF1514 family protein -
  IF770_RS13940 (IF770_13875) - 2789163..2789633 (+) 471 WP_000282758.1 hypothetical protein -
  IF770_RS13945 (IF770_13880) - 2789748..2790200 (+) 453 WP_000406191.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  IF770_RS13950 (IF770_13885) - 2790216..2790560 (+) 345 WP_000817289.1 HNH endonuclease -
  IF770_RS13955 (IF770_13890) - 2790688..2791155 (+) 468 WP_000919026.1 phage terminase small subunit P27 family -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17673.58 Da        Isoelectric Point: 5.2670

>NTDB_id=489300 IF770_RS13855 WP_000934762.1 2782986..2783456(+) (ssbA) [Staphylococcus aureus strain NAS_OP_098]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=489300 IF770_RS13855 WP_000934762.1 2782986..2783456(+) (ssbA) [Staphylococcus aureus strain NAS_OP_098]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

31.492

100

0.365
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365