Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | SGGB_RS08955 | Genome accession | NC_017576 |
| Coordinates | 1802770..1803360 (-) | Length | 196 a.a. |
| NCBI ID | WP_003066032.1 | Uniprot ID | A0AAW6YFC2 |
| Organism | Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1795670..1805367 | 1802770..1803360 | within | 0 |
Gene organization within MGE regions
Location: 1795670..1805367
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGGB_RS08910 (SGGB_1741) | tmk | 1795670..1796305 (-) | 636 | WP_012962375.1 | dTMP kinase | - |
| SGGB_RS08915 (SGGB_1742) | - | 1796492..1797151 (-) | 660 | WP_012962376.1 | CBS domain-containing protein | - |
| SGGB_RS08920 (SGGB_1743) | - | 1797325..1798035 (-) | 711 | WP_012962377.1 | ABC transporter ATP-binding protein | - |
| SGGB_RS08925 (SGGB_1744) | - | 1798035..1798799 (-) | 765 | WP_012962378.1 | ABC transporter ATP-binding protein | - |
| SGGB_RS08930 (SGGB_1745) | - | 1798799..1799752 (-) | 954 | WP_009854758.1 | branched-chain amino acid ABC transporter permease | - |
| SGGB_RS08935 (SGGB_1746) | - | 1799756..1800640 (-) | 885 | WP_009854759.1 | branched-chain amino acid ABC transporter permease | - |
| SGGB_RS08940 (SGGB_1747) | - | 1800692..1801873 (-) | 1182 | WP_009854760.1 | ABC transporter substrate-binding protein | - |
| SGGB_RS08945 (SGGB_1748) | - | 1801986..1802237 (-) | 252 | WP_009854761.1 | YlbG family protein | - |
| SGGB_RS08950 (SGGB_1749) | - | 1802230..1802673 (-) | 444 | WP_009854762.1 | YlbF family regulator | - |
| SGGB_RS08955 (SGGB_1750) | clpP | 1802770..1803360 (-) | 591 | WP_003066032.1 | ATP-dependent Clp protease proteolytic subunit ClpP | Regulator |
| SGGB_RS08960 (SGGB_1751) | - | 1803492..1804385 (-) | 894 | WP_009854763.1 | DMT family transporter | - |
| SGGB_RS08965 (SGGB_1752) | - | 1804498..1805367 (+) | 870 | WP_012962379.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21494.45 Da Isoelectric Point: 4.3383
>NTDB_id=48927 SGGB_RS08955 WP_003066032.1 1802770..1803360(-) (clpP) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQ
TLEKVHADAERDNWMSAQETLEYGFIDEIMVNNELN
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQ
TLEKVHADAERDNWMSAQETLEYGFIDEIMVNNELN
Nucleotide
Download Length: 591 bp
>NTDB_id=48927 SGGB_RS08955 WP_003066032.1 1802770..1803360(-) (clpP) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGATTCCCGTAGTTATTGAACAAACGAGCCGTGGCGAACGCTCATACGATATTTATTCACGCCTTTTGAAAGACCGTAT
TATCATGTTGACTGGACCAGTTGAAGATAATATGGCTAACTCTATCATTGCCCAATTGTTGTTCCTTGATGCACAAGATA
ACACTAAAGATATTTACCTTTATGTTAATACTCCTGGTGGTTCAGTATCAGCAGGACTTGCCATTGTTGATACAATGAAT
TTCATTAAATCAGATGTTCAAACAATTGTTATGGGTATGGCAGCTTCAATGGGAACTGTTATTGCGTCATCAGGTGCAAA
AGGTAAACGTTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACACAACAAA
CAGATATGGCAATTGCTGCCGAACACCTTTTGAAAACACGTCAAAACTTGGAACAAATTTTGGCTGACAACTCTGGTCAA
ACATTGGAAAAAGTTCACGCTGACGCCGAACGTGATAACTGGATGAGCGCACAAGAAACCCTCGAATACGGCTTCATCGA
CGAAATCATGGTAAACAACGAATTAAACTAA
ATGATTCCCGTAGTTATTGAACAAACGAGCCGTGGCGAACGCTCATACGATATTTATTCACGCCTTTTGAAAGACCGTAT
TATCATGTTGACTGGACCAGTTGAAGATAATATGGCTAACTCTATCATTGCCCAATTGTTGTTCCTTGATGCACAAGATA
ACACTAAAGATATTTACCTTTATGTTAATACTCCTGGTGGTTCAGTATCAGCAGGACTTGCCATTGTTGATACAATGAAT
TTCATTAAATCAGATGTTCAAACAATTGTTATGGGTATGGCAGCTTCAATGGGAACTGTTATTGCGTCATCAGGTGCAAA
AGGTAAACGTTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACACAACAAA
CAGATATGGCAATTGCTGCCGAACACCTTTTGAAAACACGTCAAAACTTGGAACAAATTTTGGCTGACAACTCTGGTCAA
ACATTGGAAAAAGTTCACGCTGACGCCGAACGTGATAACTGGATGAGCGCACAAGAAACCCTCGAATACGGCTTCATCGA
CGAAATCATGGTAAACAACGAATTAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus thermophilus LMG 18311 |
95.385 |
99.49 |
0.949 |
| clpP | Streptococcus thermophilus LMD-9 |
95.385 |
99.49 |
0.949 |
| clpP | Streptococcus pneumoniae Rx1 |
94.388 |
100 |
0.944 |
| clpP | Streptococcus pneumoniae D39 |
94.388 |
100 |
0.944 |
| clpP | Streptococcus pneumoniae R6 |
94.388 |
100 |
0.944 |
| clpP | Streptococcus pneumoniae TIGR4 |
94.388 |
100 |
0.944 |
| clpP | Streptococcus pyogenes JRS4 |
90.306 |
100 |
0.903 |
| clpP | Streptococcus pyogenes MGAS315 |
90.306 |
100 |
0.903 |
| clpP | Streptococcus mutans UA159 |
88.265 |
100 |
0.883 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
86.735 |
100 |
0.867 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
86.224 |
100 |
0.862 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
58.763 |
98.98 |
0.582 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
59.474 |
96.939 |
0.577 |