Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF701_RS13495 | Genome accession | NZ_CP062386 |
| Coordinates | 2739459..2739929 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934762.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NAS_AN_047 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2725853..2747628 | 2739459..2739929 | within | 0 |
Gene organization within MGE regions
Location: 2725853..2747628
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF701_RS13385 (IF701_13320) | lukH | 2725853..2726905 (+) | 1053 | WP_000791419.1 | bi-component leukocidin LukGH subunit H | - |
| IF701_RS13390 (IF701_13325) | lukG | 2726927..2727943 (+) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| IF701_RS13395 (IF701_13330) | sph | 2728181..2729011 (-) | 831 | Protein_2602 | sphingomyelin phosphodiesterase | - |
| IF701_RS13400 (IF701_13335) | - | 2729062..2730099 (-) | 1038 | WP_000857176.1 | site-specific integrase | - |
| IF701_RS13405 (IF701_13340) | - | 2730207..2730821 (+) | 615 | WP_000191456.1 | hypothetical protein | - |
| IF701_RS13410 (IF701_13345) | - | 2730818..2730964 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| IF701_RS13415 (IF701_13350) | - | 2731000..2731182 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| IF701_RS13420 (IF701_13355) | - | 2731382..2732101 (-) | 720 | WP_000358221.1 | XRE family transcriptional regulator | - |
| IF701_RS13425 (IF701_13360) | - | 2732243..2732461 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| IF701_RS13430 (IF701_13365) | - | 2732476..2732784 (+) | 309 | WP_001153965.1 | hypothetical protein | - |
| IF701_RS13435 (IF701_13370) | - | 2732941..2733693 (+) | 753 | WP_001148641.1 | phage antirepressor KilAC domain-containing protein | - |
| IF701_RS13440 (IF701_13375) | - | 2733709..2733903 (+) | 195 | WP_001148852.1 | hypothetical protein | - |
| IF701_RS13445 (IF701_13380) | - | 2733898..2734254 (-) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| IF701_RS13450 (IF701_13385) | - | 2734304..2734495 (+) | 192 | WP_000389906.1 | hypothetical protein | - |
| IF701_RS13455 (IF701_13390) | - | 2734497..2734724 (-) | 228 | WP_000801108.1 | hypothetical protein | - |
| IF701_RS13460 (IF701_13395) | - | 2734783..2735103 (+) | 321 | WP_001120935.1 | DUF771 domain-containing protein | - |
| IF701_RS13465 (IF701_13400) | - | 2735100..2735261 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| IF701_RS13470 (IF701_13405) | - | 2735354..2735614 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| IF701_RS13475 (IF701_13410) | - | 2735623..2735886 (+) | 264 | WP_196495107.1 | hypothetical protein | - |
| IF701_RS13480 (IF701_13415) | - | 2735883..2737838 (+) | 1956 | WP_048519603.1 | AAA family ATPase | - |
| IF701_RS13485 (IF701_13420) | - | 2737840..2738760 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF701_RS13490 (IF701_13425) | - | 2738841..2739458 (+) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| IF701_RS13495 (IF701_13430) | ssbA | 2739459..2739929 (+) | 471 | WP_000934762.1 | single-stranded DNA-binding protein | Machinery gene |
| IF701_RS13500 (IF701_13435) | - | 2739959..2740852 (+) | 894 | WP_000148327.1 | DnaD domain-containing protein | - |
| IF701_RS13505 (IF701_13440) | - | 2740859..2741077 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| IF701_RS13510 (IF701_13445) | - | 2741086..2741541 (+) | 456 | WP_000401965.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF701_RS13515 (IF701_13450) | - | 2741554..2741922 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF701_RS13520 (IF701_13455) | - | 2741926..2742168 (+) | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| IF701_RS13525 (IF701_13460) | - | 2742183..2742434 (+) | 252 | WP_001065046.1 | DUF1024 family protein | - |
| IF701_RS13530 (IF701_13465) | - | 2742424..2742597 (+) | 174 | WP_000028424.1 | hypothetical protein | - |
| IF701_RS13535 (IF701_13470) | - | 2742626..2742880 (+) | 255 | WP_223297745.1 | hypothetical protein | - |
| IF701_RS13540 (IF701_13475) | - | 2742881..2743042 (+) | 162 | WP_000889682.1 | hypothetical protein | - |
| IF701_RS13545 (IF701_13480) | - | 2743057..2743590 (+) | 534 | WP_001061838.1 | dUTPase | - |
| IF701_RS13550 (IF701_13485) | - | 2743627..2743872 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF701_RS13555 (IF701_13490) | - | 2743869..2744075 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF701_RS13560 (IF701_13495) | - | 2744072..2744458 (+) | 387 | WP_000592201.1 | hypothetical protein | - |
| IF701_RS13565 (IF701_13500) | - | 2744455..2744604 (+) | 150 | WP_000595305.1 | transcriptional activator RinB | - |
| IF701_RS13570 (IF701_13505) | - | 2744763..2745413 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| IF701_RS13575 (IF701_13510) | - | 2745413..2745613 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| IF701_RS13580 (IF701_13515) | - | 2745636..2746106 (+) | 471 | WP_000282758.1 | hypothetical protein | - |
| IF701_RS13585 (IF701_13520) | - | 2746221..2746673 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| IF701_RS13590 (IF701_13525) | - | 2746689..2747033 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| IF701_RS13595 (IF701_13530) | - | 2747161..2747628 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.58 Da Isoelectric Point: 5.2670
>NTDB_id=488968 IF701_RS13495 WP_000934762.1 2739459..2739929(+) (ssbA) [Staphylococcus aureus strain NAS_AN_047]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=488968 IF701_RS13495 WP_000934762.1 2739459..2739929(+) (ssbA) [Staphylococcus aureus strain NAS_AN_047]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |