Detailed information NTG0048889

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SGGB_RS00645
• Genome accession: NC_017576
• Coordinates: 101382..101813 (+)
• Length: 143 a.a.
• NCBI ID: WP_009853232.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 96382..106813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGGB_RS00625 (SGGB_0086)	-	98758..99126 (+)	369	WP_009853228.1	DUF1033 family protein	-
SGGB_RS00630 (SGGB_0087)	comYA	99197..100138 (+)	942	WP_012961327.1	competence type IV pilus ATPase ComGA	Machinery gene
SGGB_RS00635 (SGGB_0088)	comYB	100020..101105 (+)	1086	WP_012961328.1	competence type IV pilus assembly protein ComGB	Machinery gene
SGGB_RS00640 (SGGB_0089)	comYC	101105..101398 (+)	294	WP_009853231.1	competence type IV pilus major pilin ComGC	Machinery gene
SGGB_RS00645 (SGGB_0090)	comYD	101382..101813 (+)	432	WP_009853232.1	competence type IV pilus minor pilin ComGD	Machinery gene
SGGB_RS00650 (SGGB_0091)	comGE	101767..102060 (+)	294	WP_012961329.1	competence type IV pilus minor pilin ComGE	-
SGGB_RS00655 (SGGB_0092)	comYF	102014..102481 (+)	468	WP_014619875.1	competence type IV pilus minor pilin ComGF	Machinery gene
SGGB_RS00660 (SGGB_0093)	comYG	102453..102767 (+)	315	WP_009853235.1	competence type IV pilus minor pilin ComGG	Machinery gene
SGGB_RS00665 (SGGB_0094)	comYH	102840..103796 (+)	957	WP_009853236.1	class I SAM-dependent methyltransferase	Machinery gene
SGGB_RS00670 (SGGB_0095)	-	103849..105048 (+)	1200	WP_009853237.1	acetate kinase	-
SGGB_RS00675 (SGGB_0096)	-	105279..105479 (+)	201	WP_012961332.1	helix-turn-helix transcriptional regulator	-
SGGB_RS00680 (SGGB_0097)	-	105489..105698 (+)	210	WP_009853239.1	hypothetical protein	-
SGGB_RS00685 (SGGB_0098)	-	105711..106163 (+)	453	WP_009853240.1	hypothetical protein	-
SGGB_RS00690 (SGGB_0099)	-	106175..106813 (+)	639	WP_009853241.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 15983.37 Da
• Isoelectric Point: 8.9601

>NTDB_id=48889 SGGB_RS00645 WP_009853232.1 101382..101813(+) (comYD) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MKLKNKTVSAFTLLESLLTLGISCFIIMMLSGSLNGIFQNVEEKIFFLSFENLYCDTQKLANARQQSLTLTVSQEEVSTD
FSTVKLPPSVKVDKTYQVNFDKAGGNSSLAKLTFQTSDKEVNYQLYLGSGKYKKTETKSLHTP

Nucleotide

• Length: 432 bp

>NTDB_id=48889 SGGB_RS00645 WP_009853232.1 101382..101813(+) (comYD) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGAAGCTAAAAAATAAAACAGTTTCAGCTTTTACCCTTTTAGAAAGTTTATTAACACTAGGAATTTCCTGTTTTATTAT
CATGATGTTGTCAGGCTCTTTGAATGGTATTTTTCAAAATGTGGAAGAAAAGATTTTCTTTTTATCGTTTGAAAATCTCT
ATTGTGACACGCAAAAATTAGCTAATGCTAGGCAACAAAGCCTTACGTTGACTGTTTCGCAAGAGGAAGTGTCAACTGAT
TTTTCAACTGTAAAACTCCCTCCGTCGGTCAAAGTAGATAAAACTTATCAAGTCAATTTTGACAAAGCAGGAGGCAATTC
GTCCTTGGCAAAATTAACCTTTCAAACGTCAGATAAAGAGGTCAACTATCAATTATATTTAGGGAGTGGTAAATATAAAA
AGACAGAAACTAAAAGCTTACATACTCCTTGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.198	91.608	0.496
comYD	Streptococcus mutans UA159	54.198	91.608	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	45.926	94.406	0.434
comGD/cglD	Streptococcus pneumoniae Rx1	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae D39	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae R6	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae TIGR4	46.212	92.308	0.427
comGD/cglD	Streptococcus mitis NCTC 12261	46.212	92.308	0.427
comGD/cglD	Streptococcus mitis SK321	45.455	92.308	0.42