Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF727_RS13380 | Genome accession | NZ_CP062356 |
| Coordinates | 2714472..2714942 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934762.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NAS_AN_203 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2694937..2722641 | 2714472..2714942 | within | 0 |
Gene organization within MGE regions
Location: 2694937..2722641
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF727_RS13250 (IF727_13185) | groES | 2694937..2695221 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IF727_RS13255 (IF727_13190) | groL | 2695297..2696913 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| IF727_RS13260 (IF727_13195) | - | 2697453..2698760 (-) | 1308 | WP_240022433.1 | TrkH family potassium uptake protein | - |
| IF727_RS13265 (IF727_13200) | - | 2699204..2700427 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| IF727_RS13270 (IF727_13205) | lukH | 2700863..2701918 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| IF727_RS13275 (IF727_13210) | lukG | 2701940..2702956 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| IF727_RS13280 (IF727_13215) | sph | 2703194..2704024 (-) | 831 | Protein_2582 | sphingomyelin phosphodiesterase | - |
| IF727_RS13285 (IF727_13220) | - | 2704075..2705112 (-) | 1038 | WP_000857176.1 | site-specific integrase | - |
| IF727_RS13290 (IF727_13225) | - | 2705220..2705834 (+) | 615 | WP_000191456.1 | hypothetical protein | - |
| IF727_RS13295 (IF727_13230) | - | 2705831..2705977 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| IF727_RS13300 (IF727_13235) | - | 2706013..2706195 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| IF727_RS13305 (IF727_13240) | - | 2706395..2707114 (-) | 720 | WP_000358221.1 | XRE family transcriptional regulator | - |
| IF727_RS13310 (IF727_13245) | - | 2707256..2707474 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| IF727_RS13315 (IF727_13250) | - | 2707489..2707797 (+) | 309 | WP_001153965.1 | hypothetical protein | - |
| IF727_RS13320 (IF727_13255) | - | 2707954..2708706 (+) | 753 | WP_001148641.1 | phage antirepressor KilAC domain-containing protein | - |
| IF727_RS13325 (IF727_13260) | - | 2708722..2708916 (+) | 195 | WP_001148852.1 | hypothetical protein | - |
| IF727_RS13330 (IF727_13265) | - | 2708911..2709267 (-) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| IF727_RS13335 (IF727_13270) | - | 2709317..2709508 (+) | 192 | WP_000389906.1 | hypothetical protein | - |
| IF727_RS13340 (IF727_13275) | - | 2709510..2709737 (-) | 228 | WP_000801108.1 | hypothetical protein | - |
| IF727_RS13345 (IF727_13280) | - | 2709796..2710116 (+) | 321 | WP_001120935.1 | DUF771 domain-containing protein | - |
| IF727_RS13350 (IF727_13285) | - | 2710113..2710274 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| IF727_RS13355 (IF727_13290) | - | 2710367..2710627 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| IF727_RS13360 (IF727_13295) | - | 2710636..2710899 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF727_RS13365 (IF727_13300) | - | 2710896..2712851 (+) | 1956 | WP_048519603.1 | AAA family ATPase | - |
| IF727_RS13370 (IF727_13305) | - | 2712853..2713773 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF727_RS13375 (IF727_13310) | - | 2713854..2714471 (+) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| IF727_RS13380 (IF727_13315) | ssbA | 2714472..2714942 (+) | 471 | WP_000934762.1 | single-stranded DNA-binding protein | Machinery gene |
| IF727_RS13385 (IF727_13320) | - | 2714972..2715865 (+) | 894 | WP_000148327.1 | DnaD domain-containing protein | - |
| IF727_RS13390 (IF727_13325) | - | 2715872..2716090 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| IF727_RS13395 (IF727_13330) | - | 2716099..2716554 (+) | 456 | WP_000401965.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF727_RS13400 (IF727_13335) | - | 2716567..2716935 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF727_RS13405 (IF727_13340) | - | 2716939..2717181 (+) | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| IF727_RS13410 (IF727_13345) | - | 2717196..2717447 (+) | 252 | WP_001065046.1 | DUF1024 family protein | - |
| IF727_RS13415 (IF727_13350) | - | 2717437..2717610 (+) | 174 | WP_000028424.1 | hypothetical protein | - |
| IF727_RS13420 (IF727_13355) | - | 2717639..2717893 (+) | 255 | WP_223297745.1 | hypothetical protein | - |
| IF727_RS13425 (IF727_13360) | - | 2717894..2718055 (+) | 162 | WP_000889682.1 | hypothetical protein | - |
| IF727_RS13430 (IF727_13365) | - | 2718070..2718603 (+) | 534 | WP_001061838.1 | dUTPase | - |
| IF727_RS13435 (IF727_13370) | - | 2718640..2718885 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF727_RS13440 (IF727_13375) | - | 2718882..2719088 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF727_RS13445 (IF727_13380) | - | 2719085..2719471 (+) | 387 | WP_000592201.1 | hypothetical protein | - |
| IF727_RS13450 (IF727_13385) | - | 2719468..2719617 (+) | 150 | WP_000595305.1 | transcriptional activator RinB | - |
| IF727_RS13455 (IF727_13390) | - | 2719776..2720426 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| IF727_RS13460 (IF727_13395) | - | 2720426..2720626 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| IF727_RS13465 (IF727_13400) | - | 2720649..2721119 (+) | 471 | WP_000282758.1 | hypothetical protein | - |
| IF727_RS13470 (IF727_13405) | - | 2721234..2721686 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| IF727_RS13475 (IF727_13410) | - | 2721702..2722046 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| IF727_RS13480 (IF727_13415) | - | 2722174..2722641 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.58 Da Isoelectric Point: 5.2670
>NTDB_id=488384 IF727_RS13380 WP_000934762.1 2714472..2714942(+) (ssbA) [Staphylococcus aureus strain NAS_AN_203]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=488384 IF727_RS13380 WP_000934762.1 2714472..2714942(+) (ssbA) [Staphylococcus aureus strain NAS_AN_203]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |