Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IHQ43_RS02165 Genome accession   NZ_CP062253
Coordinates   489268..491346 (+) Length   692 a.a.
NCBI ID   WP_192563216.1    Uniprot ID   -
Organism   Pseudomonas gozinkensis strain IzPS32d     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 484268..496346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHQ43_RS02145 comM 486482..487546 (+) 1065 WP_007952389.1 pilus assembly protein PilM Machinery gene
  IHQ43_RS02150 - 487546..488112 (+) 567 WP_192563213.1 PilN domain-containing protein -
  IHQ43_RS02155 pilO 488109..488732 (+) 624 WP_192563214.1 type 4a pilus biogenesis protein PilO -
  IHQ43_RS02160 - 488729..489253 (+) 525 WP_192563215.1 pilus assembly protein PilP -
  IHQ43_RS02165 pilQ 489268..491346 (+) 2079 WP_192563216.1 type IV pilus secretin PilQ Machinery gene
  IHQ43_RS02170 aroK 491351..491869 (+) 519 WP_011332081.1 shikimate kinase AroK -
  IHQ43_RS02175 aroB 492022..493122 (+) 1101 WP_011332082.1 3-dehydroquinate synthase -
  IHQ43_RS02180 - 493133..494734 (+) 1602 WP_192563217.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75051.18 Da        Isoelectric Point: 5.5724

>NTDB_id=487382 IHQ43_RS02165 WP_192563216.1 489268..491346(+) (pilQ) [Pseudomonas gozinkensis strain IzPS32d]
MNRIFSTLGFSLWIALLSPMVQAANLKALDVAALPGDRVELKLSFDGPPPQPKGYTTDSPARIALDLPGVASQLASKTRD
LGSGNARTATVVEANNRTRLIISLTQLAPYDTRVEGNTVFVVVGQGSKVAAPRTAARAPRAAPAAAPVRTYTPTARAIRG
VDFQRGTAGEGNVVIDLSDPAIAPDIQEHDGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNAGVSGDRATITVEPSGT
FDYSTYQTDNKLTVSIRPLTVDDLQKRNADRNSYNGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAK
VDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSN
GSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=487382 IHQ43_RS02165 WP_192563216.1 489268..491346(+) (pilQ) [Pseudomonas gozinkensis strain IzPS32d]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGCTTTCGCCGATGGTACAGGCAGCCAATCTGAA
GGCGCTGGACGTCGCGGCACTGCCGGGCGACCGGGTCGAGCTGAAGCTGTCGTTCGACGGCCCGCCTCCGCAGCCCAAGG
GCTACACCACCGATTCACCGGCGCGGATCGCCCTCGATCTGCCGGGTGTCGCCAGTCAACTGGCGAGCAAGACCCGTGAC
CTGGGCAGTGGCAATGCCCGCACAGCCACGGTGGTCGAGGCCAATAACCGGACGCGGCTGATCATCAGCCTGACGCAACT
GGCGCCTTACGACACCCGGGTCGAAGGCAATACGGTGTTCGTGGTGGTCGGGCAGGGCAGCAAAGTCGCTGCACCGCGTA
CGGCGGCTCGTGCACCGCGCGCAGCACCTGCTGCGGCGCCGGTCCGCACGTATACGCCGACCGCCAGGGCCATTCGCGGC
GTGGATTTCCAGCGTGGCACGGCGGGCGAGGGCAACGTGGTCATCGACTTGTCCGATCCGGCCATTGCCCCGGACATCCA
GGAACACGACGGCAAGATCATCCTCAATTTTGCCCGTACCCAATTGCCCGAACCGCTGCGGGTGCGCCTCGACGTCAAGG
ATTTCGCCACCCCGGTGCAGTTCGTCAATGCCGGTGTCAGCGGAGATCGCGCGACGATCACCGTCGAGCCCAGCGGGACT
TTCGACTATTCCACTTACCAGACCGACAACAAGCTGACCGTCAGCATCCGGCCTTTGACCGTCGATGACCTGCAAAAGCG
CAACGCCGATCGCAACAGCTATAACGGCGAAAAGCTCTCTCTCAACTTCCAGGACATCGATGTGCGTTCGGTGCTGCAAC
TGATCGCCGACTTCACCAACCTCAACCTGGTGGCCAGCGACACGGTGCAGGGCGGCATTACCTTGCGCCTGCAGAACGTG
CCGTGGGATCAGGCGCTGGATCTGGTGCTCAAGACCAAAGGCCTGGACAAGCGCAAGGTCGGCAACGTGTTGCTGGTGGC
GCCGGCCGATGAAATCGCTGCCCGCGAACGGCAGGAATTGGAGTCGCAGAAGCAGATCGCCGAACTGGCGCCGCTGCGCC
GCGAACTCCTGCAAGTGAACTACGCCAAGGCTGCGGACATCGCCAAGCTGTTCCAGTCAGTCACCAGTGCCGAGGCCAAG
GTCGACGAGCGCGGTTCGATCACCGTCGATGAGCGGACCAACAACATCATTGCCTACCAGACTCAGGATCGCCTCGACGA
GCTGCGGCGGATCGTGGCGCAGCTGGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCG
ATTACGACAAGAGTCTGGGTGTGCGCTGGGGTGGTTCCATCCAGAACAAGGGCAACTGGAACACTTCCGGGGTCAGCAAC
GGCTCTTCGACCACCATCGGTACGCCGGGCAGCACCAGCACCAACTCGCCGTTCGTCGACATGGGCACGGTCAACAACAC
CTCCGGAATCGGCATCGCGTTCATCACCGACAACGTCTTGCTCGACCTTGAGCTGACCGCGATGGAGAAGACCGGCAACG
GCGAAATCGTCTCGCAGCCCAAGGTGGTCACCTCCGACAAGGAAACCGCGAAGATCCTCAAGGGCACCGAGATCCCGTAC
CAGGAGGCCAGCTCCAGCGGCGCTACGTCGGTGTCCTTCAAGGAGGCGTCGCTTTCGCTGGAGGTGACGCCGCAGATCAC
CCCGGACAACCGCATCATCATGGAGGTGAAAGTCACCAAGGATGAACCGGACTACCTGAACAAAGTGCAGGACGTACCGC
CGATCAAGAAGAACGAGGTCAATGCCAAGGTACTGGTGAACGACGGCGAGACCATCGTGATTGGCGGGGTTTTCTCAAAT
ACTCAAAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

Bacterial type II and III secretion system protein (Secretin)

(527-683)

AMIN domain (AMIN)

(37-121)

Secretin and TonB N terminus short domain (STN)

(302-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.748

100

0.741
  pilQ Acinetobacter baumannii strain A118

37.917

100

0.41
  pilQ Acinetobacter baumannii D1279779

37.917

100

0.41
  comQ Acinetobacter baylyi ADP1

40.778

100

0.409
  pilQ Legionella pneumophila strain Lp02

37.722

97.688

0.368
  pilQ Legionella pneumophila strain ERS1305867

37.741

97.254

0.367