Detailed information NTG0048731

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STND_RS08850
• Genome accession: NC_017563
• Coordinates: 1687987..1688415 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus ND03
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1682987..1693415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STND_RS08805 (STND_1792)	-	1683124..1683567 (-)	444	WP_011681680.1	hypothetical protein	-
STND_RS11825 (STND_1793)	-	1683641..1684066 (-)	426	WP_014608739.1	CPBP family intramembrane glutamic endopeptidase	-
STND_RS11830 (STND_1794)	-	1684023..1684298 (-)	276	WP_011681681.1	hypothetical protein	-
STND_RS08820 (STND_1795)	-	1684310..1684507 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
STND_RS08825 (STND_1796)	-	1684756..1685949 (-)	1194	WP_014608740.1	acetate kinase	-
STND_RS08830 (STND_1797)	comYH	1686005..1686961 (-)	957	WP_014608741.1	class I SAM-dependent methyltransferase	Machinery gene
STND_RS08835 (STND_1798)	comGG	1687006..1687323 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STND_RS08840 (STND_1799)	comYF	1687301..1687738 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
STND_RS08845	comGE	1687722..1688015 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STND_RS08850 (STND_1801)	comYD	1687987..1688415 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STND_RS08855 (STND_1802)	comYC	1688375..1688701 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STND_RS08860 (STND_1803)	comYB	1688698..1689798 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
STND_RS08865 (STND_1804)	comGA/cglA/cilD	1689680..1690621 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
STND_RS08870 (STND_1805)	-	1690702..1691064 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=48731 STND_RS08850 WP_011226626.1 1687987..1688415(-) (comYD) [Streptococcus thermophilus ND03]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=48731 STND_RS08850 WP_011226626.1 1687987..1688415(-) (comYD) [Streptococcus thermophilus ND03]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38