Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   STND_RS08860 Genome accession   NC_017563
Coordinates   1688698..1689798 (-) Length   366 a.a.
NCBI ID   WP_116920398.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683698..1694798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS11830 (STND_1794) - 1684023..1684298 (-) 276 WP_011681681.1 hypothetical protein -
  STND_RS08820 (STND_1795) - 1684310..1684507 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STND_RS08825 (STND_1796) - 1684756..1685949 (-) 1194 WP_014608740.1 acetate kinase -
  STND_RS08830 (STND_1797) comYH 1686005..1686961 (-) 957 WP_014608741.1 class I SAM-dependent methyltransferase Machinery gene
  STND_RS08835 (STND_1798) comGG 1687006..1687323 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STND_RS08840 (STND_1799) comYF 1687301..1687738 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STND_RS08845 comGE 1687722..1688015 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STND_RS08850 (STND_1801) comYD 1687987..1688415 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STND_RS08855 (STND_1802) comYC 1688375..1688701 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STND_RS08860 (STND_1803) comYB 1688698..1689798 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STND_RS08865 (STND_1804) comGA/cglA/cilD 1689680..1690621 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  STND_RS08870 (STND_1805) - 1690702..1691064 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41797.91 Da        Isoelectric Point: 10.1084

>NTDB_id=48733 STND_RS08860 WP_116920398.1 1688698..1689798(-) (comYB) [Streptococcus thermophilus ND03]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=48733 STND_RS08860 WP_116920398.1 1688698..1689798(-) (comYB) [Streptococcus thermophilus ND03]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCAGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGATATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.453

90.437

0.456
  comGB/cglB Streptococcus mitis SK321

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae D39

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae R6

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

49.695

89.617

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment