Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STND_RS08830 Genome accession   NC_017563
Coordinates   1686005..1686961 (-) Length   318 a.a.
NCBI ID   WP_014608741.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681005..1691961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS08795 (STND_1790) proC 1681565..1682335 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STND_RS08800 (STND_1791) - 1682365..1683027 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  STND_RS08805 (STND_1792) - 1683124..1683567 (-) 444 WP_011681680.1 hypothetical protein -
  STND_RS11825 (STND_1793) - 1683641..1684066 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  STND_RS11830 (STND_1794) - 1684023..1684298 (-) 276 WP_011681681.1 hypothetical protein -
  STND_RS08820 (STND_1795) - 1684310..1684507 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STND_RS08825 (STND_1796) - 1684756..1685949 (-) 1194 WP_014608740.1 acetate kinase -
  STND_RS08830 (STND_1797) comYH 1686005..1686961 (-) 957 WP_014608741.1 class I SAM-dependent methyltransferase Machinery gene
  STND_RS08835 (STND_1798) comGG 1687006..1687323 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STND_RS08840 (STND_1799) comYF 1687301..1687738 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STND_RS08845 comGE 1687722..1688015 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STND_RS08850 (STND_1801) comYD 1687987..1688415 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STND_RS08855 (STND_1802) comYC 1688375..1688701 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STND_RS08860 (STND_1803) comYB 1688698..1689798 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STND_RS08865 (STND_1804) comGA/cglA/cilD 1689680..1690621 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  STND_RS08870 (STND_1805) - 1690702..1691064 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=48729 STND_RS08830 WP_014608741.1 1686005..1686961(-) (comYH) [Streptococcus thermophilus ND03]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHILMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=48729 STND_RS08830 WP_014608741.1 1686005..1686961(-) (comYH) [Streptococcus thermophilus ND03]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATATTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.571

99.057

0.679
  comYH Streptococcus mutans UA140

68.571

99.057

0.679

Multiple sequence alignment