NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	KCI35_RS07240	Genome accession	NZ_CP073348
Coordinates	1715703..1716371 (+)	Length	222 a.a.
NCBI ID	WP_010956008.1	Uniprot ID	A0A099WVY9
Organism	Porphyromonas gingivalis strain GMU202011
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1710703..1721371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCI35_RS07215	-	1710974..1711813 (+)	840	WP_211604666.1	alpha/beta hydrolase family protein	-
KCI35_RS07220	-	1711849..1712508 (-)	660	WP_004584949.1	YiiX/YebB-like N1pC/P60 family cysteine hydrolase	-
KCI35_RS07225	-	1712489..1712833 (-)	345	WP_004584948.1	hypothetical protein	-
KCI35_RS07230	-	1713338..1714195 (+)	858	WP_021663667.1	head GIN domain-containing protein	-
KCI35_RS07235	-	1714470..1715330 (+)	861	WP_013816198.1	head GIN domain-containing protein	-
KCI35_RS07240	clpP	1715703..1716371 (+)	669	WP_010956008.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
KCI35_RS07245	clpX	1716408..1717643 (+)	1236	WP_004584942.1	ATP-dependent Clp protease ATP-binding subunit ClpX	-
KCI35_RS07250	recQ	1717722..1719899 (+)	2178	WP_004584941.1	DNA helicase RecQ	-
KCI35_RS07255	-	1719936..1721318 (+)	1383	WP_211604667.1	peptidylprolyl isomerase	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 24804.44 Da Isoelectric Point: 5.6830

                                >NTDB_id=487158 KCI35_RS07240 WP_010956008.1 1715703..1716371(+) (clpP) [Porphyromonas gingivalis strain GMU202011]

MNEFKKYATRHIGLNAQALDDYTRIQSSYISPTIIEERQLNVAQMDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDS

ADPGKDISIYLNSPGGSVYAGYGIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQPLGGMQGQA

SDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYGMIDKILEKNRK

Nucleotide

Download Length: 669 bp

                                >NTDB_id=487158 KCI35_RS07240 WP_010956008.1 1715703..1716371(+) (clpP) [Porphyromonas gingivalis strain GMU202011]

ATGAACGAATTCAAAAAATACGCGACCCGACATATCGGGTTGAATGCACAGGCCTTGGACGACTATACCAGAATCCAAAG

CAGCTACATCTCTCCGACCATTATCGAAGAACGCCAGTTGAACGTCGCACAAATGGATGTGTTCTCACGTCTAATGATGG

ATCGGATCATCTTCCTTGGCACTCAGATCGACGATTACACGGCCAATGTCATTCAAGCACAGCTTCTTTATCTCGATAGC

GCCGACCCCGGTAAAGATATTTCCATCTATCTGAATTCACCCGGCGGATCTGTTTATGCCGGTTATGGCATATACGATAC

GATGCAGTATATAGGGTGCGATGTGGCCACTATCTGTACGGGCATGGCCGCGTCTATGGCATCAGTGCTGCTCGTAGCAG

GAACGAAAGGCAAACGCTTTGCTTTGCCTCATTCCCGCGTGATGATACATCAGCCACTTGGTGGTATGCAGGGGCAGGCC

AGCGATTTGGAGATCGCAGCTCGCGAGATTCTTCGCGTCAAGAAAGAGCTTTACACGATTATCTCTTCTCACAGTGGAAA

GCCCGTCGAGCAGGTCGAAAAAGATAGTGATCGGGACTATTGGATGACAGCCCCCGAAGCATTGGAGTACGGGATGATAG

ATAAAATCCTCGAAAAGAATCGAAAGTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(44-219)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A099WVY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	57.527	83.784	0.482
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.927	86.036	0.464
clpP	Lactococcus lactis subsp. cremoris KW2	50	87.387	0.437
clpP	Streptococcus mutans UA159	49.738	86.036	0.428
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	48.454	87.387	0.423
clpP	Streptococcus thermophilus LMG 18311	48.958	86.486	0.423
clpP	Streptococcus thermophilus LMD-9	48.958	86.486	0.423
clpP	Streptococcus pyogenes MGAS315	48.691	86.036	0.419
clpP	Streptococcus pyogenes JRS4	48.691	86.036	0.419
clpP	Streptococcus pneumoniae Rx1	47.644	86.036	0.41
clpP	Streptococcus pneumoniae D39	47.644	86.036	0.41
clpP	Streptococcus pneumoniae R6	47.644	86.036	0.41
clpP	Streptococcus pneumoniae TIGR4	47.644	86.036	0.41

Detailed information NTG0487158