Detailed information NTG0487134

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: D1J36_RS08800
• Genome accession: NZ_CP073239
• Coordinates: 1903180..1903854 (-)
• Length: 224 a.a.
• NCBI ID: WP_052911268.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain RCAD0416
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1898180..1908854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1J36_RS08770 (D1J36_008760)	-	1899059..1899496 (+)	438	WP_154136800.1	VOC family protein	-
D1J36_RS08775 (D1J36_008765)	-	1899510..1900238 (+)	729	WP_154136802.1	hypothetical protein	-
D1J36_RS08780 (D1J36_008770)	-	1900377..1900832 (+)	456	WP_154136803.1	hypothetical protein	-
D1J36_RS08785 (D1J36_008775)	-	1900929..1901627 (+)	699	WP_154136804.1	hypothetical protein	-
D1J36_RS08790 (D1J36_008780)	-	1901739..1902371 (+)	633	WP_154136805.1	hypothetical protein	-
D1J36_RS08795 (D1J36_008785)	-	1902398..1903111 (+)	714	WP_154136806.1	M949_RS01915 family surface polysaccharide biosynthesis protein	-
D1J36_RS08800 (D1J36_008790)	clpP	1903180..1903854 (-)	675	WP_052911268.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
D1J36_RS08805 (D1J36_008795)	dnaG	1903934..1905856 (-)	1923	WP_154136807.1	DNA primase	-
D1J36_RS08810 (D1J36_008800)	-	1905872..1906549 (-)	678	WP_153935313.1	VTT domain-containing protein	-
D1J36_RS08815 (D1J36_008805)	prfB	1906627..1907739 (-)	1113	WP_252339438.1	peptide chain release factor 2	-
D1J36_RS08820 (D1J36_008810)	lgt	1907900..1908751 (-)	852	WP_154136808.1	prolipoprotein diacylglyceryl transferase	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25033.73 Da
• Isoelectric Point: 4.9641

>NTDB_id=487134 D1J36_RS08800 WP_052911268.1 1903180..1903854(-) (clpP) [Riemerella anatipestifer strain RCAD0416]
MDIKKEFRDFSVKHLGNNGLATDQYMGTFNPTNLTPYIMEERRMNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLL
FLESADPSKDIQIYINSPGGSVYAGLGIYDTMQIIKPDVATICTGMAASMGAVLLVAGEKGKRSALKHSRVMIHQPSGGA
QGVASDMEINLREMLKLKKELYDIISEHSGQSYEWVEKSSDRDYWMTSEEAKEFGMIDEVLARK

Nucleotide

• Length: 675 bp

>NTDB_id=487134 D1J36_RS08800 WP_052911268.1 1903180..1903854(-) (clpP) [Riemerella anatipestifer strain RCAD0416]
ATGGATATTAAAAAGGAATTTAGAGATTTTTCGGTAAAGCACTTAGGAAATAATGGACTAGCTACCGACCAATATATGGG
GACTTTTAACCCAACCAACCTTACGCCATACATTATGGAGGAACGCCGTATGAATGTAGCACAAATGGACGTTTTTTCTA
GATTGATGATGGATAGAATTATCTTTCTAGGCACTGGTATAGACGACCAAGTTGCTAATATTGTAACGGCTCAGCTTCTA
TTTTTAGAGAGTGCAGACCCTTCTAAAGACATTCAGATTTACATTAACTCTCCTGGCGGAAGTGTATATGCAGGGTTGGG
AATTTATGACACGATGCAAATCATTAAGCCTGATGTAGCTACTATCTGTACAGGTATGGCTGCTTCTATGGGAGCTGTAC
TTCTTGTAGCGGGTGAAAAGGGTAAACGCTCTGCTCTTAAACATTCTAGAGTAATGATACACCAGCCTAGTGGCGGAGCT
CAAGGTGTGGCTAGCGATATGGAAATCAATCTTAGAGAAATGCTTAAGCTAAAGAAAGAGCTTTATGATATTATCTCTGA
ACATTCTGGACAATCTTATGAATGGGTTGAAAAATCTTCTGATAGAGATTACTGGATGACCTCTGAAGAAGCTAAAGAAT
TCGGAATGATAGACGAAGTTCTAGCTAGAAAATAA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (48-223)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	55.556	84.375	0.469
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.105	84.821	0.442
clpP	Streptococcus pneumoniae D39	46.632	86.161	0.402
clpP	Streptococcus pneumoniae R6	46.632	86.161	0.402
clpP	Streptococcus pneumoniae TIGR4	46.632	86.161	0.402
clpP	Streptococcus pneumoniae Rx1	46.632	86.161	0.402
clpP	Lactococcus lactis subsp. cremoris KW2	46.842	84.821	0.397
clpP	Streptococcus thermophilus LMG 18311	44.56	86.161	0.384
clpP	Streptococcus thermophilus LMD-9	44.56	86.161	0.384
clpP	Streptococcus mutans UA159	45.026	85.268	0.384
clpP	Streptococcus pyogenes MGAS315	44.737	84.821	0.379
clpP	Streptococcus pyogenes JRS4	44.737	84.821	0.379
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.737	84.821	0.379