Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KBZ93_RS15110 Genome accession   NZ_CP073017
Coordinates   3244316..3244996 (-) Length   226 a.a.
NCBI ID   WP_010874090.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3239316..3249996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBZ93_RS15095 (KBZ93_15105) - 3239984..3241609 (-) 1626 WP_010874087.1 ammonium transporter -
  KBZ93_RS15100 (KBZ93_15110) - 3241606..3242676 (-) 1071 WP_010874088.1 TrkA family potassium uptake protein -
  KBZ93_RS15105 (KBZ93_15115) clpX 3242974..3244311 (-) 1338 WP_010874089.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  KBZ93_RS15110 (KBZ93_15120) clpP 3244316..3244996 (-) 681 WP_010874090.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  KBZ93_RS15115 - 3245126..3245281 (+) 156 WP_158299085.1 hypothetical protein -
  KBZ93_RS15120 (KBZ93_15125) tig 3245296..3246711 (-) 1416 WP_010874091.1 trigger factor -
  KBZ93_RS15125 (KBZ93_15130) - 3247205..3248221 (+) 1017 WP_010874092.1 aspartate-semialdehyde dehydrogenase -
  KBZ93_RS15130 (KBZ93_15135) dapA 3248281..3249186 (+) 906 WP_010874093.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24823.42 Da        Isoelectric Point: 4.4360

>NTDB_id=486290 KBZ93_RS15110 WP_010874090.1 3244316..3244996(-) (clpP) [Synechocystis sp. PCC 6803]
MVNSRSPYRSPLSTLGGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDI
QLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQA
REILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRPNLPDPTTPVTSLG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=486290 KBZ93_RS15110 WP_010874090.1 3244316..3244996(-) (clpP) [Synechocystis sp. PCC 6803]
ATGGTCAACTCCCGTTCTCCCTACCGTTCTCCCCTCAGTACCCTAGGGGGCAATAACATCCAAAGCGTTGTTCCCATGGT
GGTGGAACAGTCTGGCATGGGCGAGCGAGCCTTCGACATTTACTCCCGTCTGCTAAGGGAAAGAATCATCTTTTTGGGCA
CCCCTGTGGACGACCAAGTGGCAGATTCCATTGTGGCCCAGCTACTATTTTTGGACGCAGAGGACCCGGAAAAAGACATC
CAACTCTACATCAACTCCCCGGGGGGCTCCGTTTATGCCGGCCTGGCCATCTATGACACCATGCAACAGATTCGTCCCGA
TGTGGTCACCATCTGTTTTGGTCTGGCTGCCAGCATGGGGGCTTTTTTGCTTTCCGGTGGCTGTAAGGGAAAACGTATGG
CTTTGCCTAGTTCTCGCATCATGATTCACCAACCCCTCGGGGGAGCCCAGGGTCAAGCGGTGGAAATTGAAATTCAGGCC
AGGGAAATCCTGTACATCAAGGATCGCCTCAATACCATGTTGGTGGAACACACCGGCCAACCCATGGAAAAACTCCAGGA
AGATACGGAAAGAGATTTCTTTATGTCTGCGGAGGAAGCAAAGGAGTATGGCCTCATTGACCAGGTAATTTCCCGCCCTA
ATCTTCCCGACCCCACTACCCCCGTCACCTCCCTCGGTTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(34-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.016

84.513

0.566
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.138

83.628

0.553
  clpP Lactococcus lactis subsp. cremoris KW2

53.061

86.726

0.46
  clpP Streptococcus pneumoniae R6

52.308

86.283

0.451
  clpP Streptococcus pneumoniae TIGR4

52.308

86.283

0.451
  clpP Streptococcus pneumoniae Rx1

52.308

86.283

0.451
  clpP Streptococcus pneumoniae D39

52.308

86.283

0.451
  clpP Streptococcus thermophilus LMG 18311

51.795

86.283

0.447
  clpP Streptococcus thermophilus LMD-9

51.795

86.283

0.447
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.282

86.283

0.442
  clpP Streptococcus mutans UA159

50.254

87.168

0.438
  clpP Streptococcus pyogenes JRS4

50.256

86.283

0.434
  clpP Streptococcus pyogenes MGAS315

50.256

86.283

0.434