Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IGB07_RS20530 Genome accession   NZ_CP062058
Coordinates   4800893..4802158 (-) Length   421 a.a.
NCBI ID   WP_119967825.1    Uniprot ID   -
Organism   Shewanella sp. WPAGA9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4795893..4807158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB07_RS20505 mutT 4797911..4798348 (-) 438 WP_225442156.1 8-oxo-dGTP diphosphatase MutT -
  IGB07_RS20510 yacG 4798323..4798532 (-) 210 WP_192021958.1 DNA gyrase inhibitor YacG -
  IGB07_RS20515 zapD 4798573..4799310 (-) 738 WP_192021959.1 cell division protein ZapD -
  IGB07_RS20520 coaE 4799320..4799925 (-) 606 WP_192021961.1 dephospho-CoA kinase -
  IGB07_RS20525 pilD 4799938..4800867 (-) 930 WP_192023124.1 prepilin peptidase Machinery gene
  IGB07_RS20530 pilC 4800893..4802158 (-) 1266 WP_119967825.1 type II secretion system F family protein Machinery gene
  IGB07_RS20535 pilB 4802212..4803921 (-) 1710 WP_119967824.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IGB07_RS20540 - 4804300..4805655 (+) 1356 WP_192021962.1 O-antigen ligase family protein -
  IGB07_RS20545 - 4805624..4805803 (-) 180 WP_192021963.1 hypothetical protein -
  IGB07_RS21260 - 4805829..4806197 (-) 369 WP_318644288.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45905.99 Da        Isoelectric Point: 10.2158

>NTDB_id=485941 IGB07_RS20530 WP_119967825.1 4800893..4802158(-) (pilC) [Shewanella sp. WPAGA9]
MAASAAKRKPRTKKETKLQPKTFTFEWKGVNRDGQRTSGELRGASIAEIRSTLKAQGVTPKGVRKKSASLFKSEKKIKAM
DIAMITRQIATMLSAGVPLVTTIELLGRGHEKAKVRELLGNILVDVQSGIPLSDALRPHRLYFDDLYVDLVAAGEHSGSL
DAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAVAVTVLLLLFVVPQFESIFAGFGAELPAFTQIVVNLSRWLQSSWY
YFVIAIVALVWGFKRAHNTSQSFRDRVDEIILKMPAVGEILHKGAMARFARTLATTFSAGVPLIDGLESAAGASGNAVYR
KALLKVRQEVMSGMQMNVAMRTTGIFPDMLTQMVMIGEESGGLDDMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTL
VGGLIVAMYLPIFQMGSVVGV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=485941 IGB07_RS20530 WP_119967825.1 4800893..4802158(-) (pilC) [Shewanella sp. WPAGA9]
ATGGCAGCATCAGCGGCAAAAAGAAAGCCGAGAACAAAAAAAGAAACAAAGCTTCAACCAAAAACATTTACTTTTGAATG
GAAAGGCGTCAACAGAGATGGGCAACGCACATCAGGTGAACTTCGTGGAGCGTCGATAGCTGAAATTCGCAGTACACTAA
AAGCACAAGGTGTCACCCCAAAAGGCGTTAGAAAAAAATCAGCATCATTGTTTAAATCAGAGAAAAAAATCAAAGCAATG
GATATTGCAATGATTACTCGACAAATTGCAACTATGCTTTCTGCTGGTGTACCTTTAGTAACAACCATAGAGCTCTTGGG
TCGTGGCCATGAAAAAGCTAAGGTAAGAGAACTCCTTGGTAATATACTTGTAGATGTACAATCAGGGATCCCTTTGTCAG
ATGCATTAAGACCCCATAGATTATATTTTGATGATCTCTATGTTGACCTTGTCGCTGCGGGCGAACACTCAGGCTCATTA
GATGCCGTTTTTGATAGAATAGCGACATACAGAGAAAAAGCTGAAGCATTAAAATCTAAAATTAAAAAAGCAATGTTTTA
CCCTGCTGCTGTAGTTGTTGTTGCTGTTGCTGTGACTGTATTACTTCTCTTATTTGTAGTGCCTCAGTTTGAAAGTATTT
TCGCTGGTTTTGGTGCCGAACTTCCAGCGTTTACTCAAATCGTTGTTAACCTTTCTCGTTGGTTACAATCTTCTTGGTAC
TATTTTGTTATTGCTATTGTAGCTTTAGTTTGGGGCTTCAAGAGAGCTCATAATACTTCTCAAAGTTTTCGAGATAGAGT
TGACGAGATAATTCTAAAAATGCCTGCTGTGGGGGAGATTTTACACAAAGGCGCAATGGCTCGCTTCGCTCGAACACTTG
CAACAACTTTCTCTGCAGGTGTCCCATTAATTGACGGCCTTGAGTCTGCTGCAGGAGCCTCAGGTAATGCAGTATATCGC
AAAGCACTTTTAAAAGTTCGTCAAGAAGTCATGTCTGGTATGCAAATGAATGTTGCAATGAGGACTACTGGAATATTCCC
AGATATGCTAACTCAAATGGTAATGATCGGTGAAGAGTCAGGCGGGTTAGATGATATGCTCAACAAAGTGGCCAACATTT
ATGAAATGCAGGTAGATGATGCAGTTGATGGCTTATCAAGTCTAATTGAGCCTATCATGATGGTCGTCATCGGAACCTTA
GTTGGTGGCTTAATTGTTGCAATGTACTTACCTATATTCCAAATGGGTAGTGTTGTTGGCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.89

94.774

0.53
  pilC Acinetobacter baylyi ADP1

50.49

96.912

0.489
  pilC Acinetobacter baumannii D1279779

50.245

96.912

0.487
  pilC Legionella pneumophila strain ERS1305867

49.01

95.962

0.47
  pilC Vibrio cholerae strain A1552

48.241

94.537

0.456
  pilC Vibrio campbellii strain DS40M4

46.667

96.2

0.449
  pilG Neisseria gonorrhoeae MS11

42.145

95.249

0.401
  pilG Neisseria meningitidis 44/76-A

41.895

95.249

0.399