Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PPM_RS26295 Genome accession   NC_017542
Coordinates   5848719..5849210 (-) Length   163 a.a.
NCBI ID   WP_010346813.1    Uniprot ID   A0A3G8R109
Organism   Paenibacillus polymyxa M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5843719..5854210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM_RS26275 (PPM_5050) opp4C 5844190..5845113 (-) 924 WP_013373903.1 oligopeptide ABC transporter permease -
  PPM_RS26280 (PPM_5051) - 5845125..5846087 (-) 963 WP_013373904.1 ABC transporter permease -
  PPM_RS26285 (PPM_5052) - 5846156..5847895 (-) 1740 WP_013373905.1 ABC transporter substrate-binding protein -
  PPM_RS26290 (PPM_5053) rpsR 5848425..5848697 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  PPM_RS26295 (PPM_5054) ssbA 5848719..5849210 (-) 492 WP_010346813.1 single-stranded DNA-binding protein Machinery gene
  PPM_RS26300 (PPM_5055) rpsF 5849260..5849544 (-) 285 WP_007433230.1 30S ribosomal protein S6 -
  PPM_RS26305 (PPM_5056) - 5849863..5850057 (+) 195 WP_013373906.1 YjzC family protein -
  PPM_RS26310 (PPM_5057) - 5850424..5850741 (+) 318 WP_013373907.1 hypothetical protein -
  PPM_RS26320 (PPM_5058) - 5851116..5851340 (-) 225 WP_013373909.1 DUF951 domain-containing protein -
  PPM_RS26325 (PPM_5059) - 5851330..5852280 (-) 951 WP_013373910.1 mechanosensitive ion channel family protein -
  PPM_RS26330 (PPM_5060) yyaC 5852531..5853136 (+) 606 WP_013373911.1 spore protease YyaC -
  PPM_RS26335 (PPM_5061) - 5853090..5853611 (-) 522 WP_013373912.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17928.67 Da        Isoelectric Point: 4.8369

>NTDB_id=48415 PPM_RS26295 WP_010346813.1 5848719..5849210(-) (ssbA) [Paenibacillus polymyxa M1]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDSGNGGGNSGGGMREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=48415 PPM_RS26295 WP_010346813.1 5848719..5849210(-) (ssbA) [Paenibacillus polymyxa M1]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACAAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGTAAAGGTCGTTTGACGGCTGTTGAAGGCCGTGTACAAGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTTGCTGATAATGTACGTTTCTTGGAATCTAACCG
CGATAGCGGCAACGGTGGCGGCAATAGCGGTGGAGGTATGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GGCGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8R109

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.116

100

0.638
  ssb Latilactobacillus sakei subsp. sakei 23K

50.292

100

0.528
  ssb Neisseria meningitidis MC58

34.615

100

0.386
  ssb Neisseria gonorrhoeae MS11

33.714

100

0.362

Multiple sequence alignment