Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC769_RS01670 Genome accession   NZ_CP061672
Coordinates   353053..355179 (+) Length   708 a.a.
NCBI ID   WP_004705194.1    Uniprot ID   N8R2M2
Organism   Acinetobacter seifertii strain AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348053..360179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS01650 (IC769_01650) pilM 350014..351072 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC769_RS01655 (IC769_01655) pilN 351072..351716 (+) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  IC769_RS01660 (IC769_01660) pilO 351713..352453 (+) 741 WP_191108966.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC769_RS01665 (IC769_01665) pilP 352464..352991 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC769_RS01670 (IC769_01670) pilQ 353053..355179 (+) 2127 WP_004705194.1 type IV pilus secretin PilQ family protein Machinery gene
  IC769_RS01675 (IC769_01675) aroK 355191..355760 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC769_RS01680 (IC769_01680) aroB 355789..356871 (+) 1083 WP_004705197.1 3-dehydroquinate synthase -
  IC769_RS01685 (IC769_01685) - 356887..357760 (+) 874 Protein_326 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76600.06 Da        Isoelectric Point: 6.5725

>NTDB_id=483998 IC769_RS01670 WP_004705194.1 353053..355179(+) (pilQ) [Acinetobacter seifertii strain AS23]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDVRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTNKPILAATAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDAYNEKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSTSASYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEDDEAKALAQTIKLAPIQTDYIRLSYAKATDVLKLIEDTRDGKGAVANRTANSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLRDPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLTTTISGAGSAATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=483998 IC769_RS01670 WP_004705194.1 353053..355179(+) (pilQ) [Acinetobacter seifertii strain AS23]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAAGCGCAACAAAGTTTAAAGCAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGATGTACGTTCACGCTTAACTGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACGCGCGTGGAAGGCAATACTTTTATTCTAAAAATTAATTCAGCTCAAACAACGAATAAACCGA
TACTAGCAGCTACCGCACAACCACAAGGTGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAGGTTGTTATAAGAACATTAGGTACAAA
GATTCCGACACATTTAGCACGTCGTTTAAATGTAAATGATTTTGCAACGCCCGTATCAAGTATCGATGCTTATAATGAAA
AAGGTGCTGGTGTAATCACAATTCAGTCATCTGGTAGTTATGAATATATGGCTTATCAAGCTGAAAATAAGCTCACTATT
AGTTTGAAACGTCCACAAGATAAAAGTACATCAGCTTCGTATAAAGCACCAAGTTATTCTGGTAATAAGCTTTCATTAGA
CTTCCAAGACATTGAAGTGCGTCGTGTATTACAGTTGCTTGCCGATTTTACAGGCATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAACATCACGCTACGTTTGAAAGATGTACCTTGGGATCAAGCACTAGATATTATTTTAAAAACTAAAAATCTT
GATAAACGTCGTAATGGAAATGTAATTTGGATTGCTCCTGTTACTGAATTAATTAAAGCAGAAGATGATGAGGCAAAAGC
CTTAGCTCAAACGATTAAGTTAGCGCCAATCCAAACAGATTATATTCGTTTGAGTTATGCAAAAGCGACTGATGTGCTTA
AGTTGATTGAAGATACTCGTGATGGTAAAGGTGCAGTTGCAAATCGTACCGCAAACTCTGATTCTCTTGCGTTGGAGAGC
TTATTAAGTTCACGTGGTAGCGCTGTTGCTGATACCCGGACTAATACTTTGATTGTAAATGATACAGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAACTACTTGATGTGCAAGTTAAGCAGGTGATGGTTGAAGCGCGTATCGTCAGAGCGTCTA
CGTCATTTACTAAAGAACTTGGAGTTAAGTGGGGTATTCTTTCACAAGGTATTACTAATAATAAAAATTTATTGGTTGGT
GGTAGTGAAACAACTTTATGGAATTTACGTGACCCTAAAAAAGATGAAACTACTGGAGGCTATAAATATACCATCGAACG
TCCAGATAACTTAAACGTTGATTTGGGAGTCTCTAATCCGGCGGGAAGTATTGCCTTTGGTCTTATCAGTATGTCTGATT
TTATGTTAGATCTTGAACTCTCAGCTTTACAGGCTGATGGTTATGGTGAAGTCATTTCAACCCCTAAAGTCATGACTGCC
GATAAGCAAACTGCAAAAGTTGCCACGGGTCAACAAGTTCCTTATCTAACGACAACGATATCTGGTGCGGGTTCAGCAGC
CACAACATCATTTAAAGATGCTCTTTTAAGTCTTGATGTTACACCTAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TAGATATTTCTAAGGATTCTGTAGCGGGTGAAGCGCCAAATGGTGAGTTAATTCTGAATAAGAATAATATTAATACCAAT
GTGCTGGTTGATAACGGAGAAACCGTCATTTTGGGTGGTGTATTCGAGCAAACAACGACAAATACCCAAACTAAAGTTCC
ATTCTTTGGGGATATTCCTTTAGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTT
TCGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

AMIN domain (AMIN)

(39-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8R2M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

87.517

100

0.891
  pilQ Acinetobacter baumannii strain A118

87.379

100

0.89
  comQ Acinetobacter baylyi ADP1

72.765

100

0.736
  pilQ Pseudomonas aeruginosa PAK

39.773

99.435

0.395