Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC769_RS01665 Genome accession   NZ_CP061672
Coordinates   352464..352991 (+) Length   175 a.a.
NCBI ID   WP_004705193.1    Uniprot ID   N8SH39
Organism   Acinetobacter seifertii strain AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347464..357991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS01650 (IC769_01650) pilM 350014..351072 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC769_RS01655 (IC769_01655) pilN 351072..351716 (+) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  IC769_RS01660 (IC769_01660) pilO 351713..352453 (+) 741 WP_191108966.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC769_RS01665 (IC769_01665) pilP 352464..352991 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC769_RS01670 (IC769_01670) pilQ 353053..355179 (+) 2127 WP_004705194.1 type IV pilus secretin PilQ family protein Machinery gene
  IC769_RS01675 (IC769_01675) aroK 355191..355760 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC769_RS01680 (IC769_01680) aroB 355789..356871 (+) 1083 WP_004705197.1 3-dehydroquinate synthase -
  IC769_RS01685 (IC769_01685) - 356887..357760 (+) 874 Protein_326 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19340.53 Da        Isoelectric Point: 9.4007

>NTDB_id=483997 IC769_RS01665 WP_004705193.1 352464..352991(+) (pilP) [Acinetobacter seifertii strain AS23]
MKIKQITLYILACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483997 IC769_RS01665 WP_004705193.1 352464..352991(+) (pilP) [Acinetobacter seifertii strain AS23]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCTTGTGCTGCGCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATTGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGTCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGCTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
GAATAGTCGTGGTCAAATATTAGCTCTCATTCAGACGCCAGATCATCAAGTTGAACGCGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SH39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703