Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   IC769_RS01660 Genome accession   NZ_CP061672
Coordinates   351713..352453 (+) Length   246 a.a.
NCBI ID   WP_191108966.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346713..357453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS01645 (IC769_01645) ponA 347297..349852 (-) 2556 WP_068932384.1 penicillin-binding protein PBP1a -
  IC769_RS01650 (IC769_01650) pilM 350014..351072 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC769_RS01655 (IC769_01655) pilN 351072..351716 (+) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  IC769_RS01660 (IC769_01660) pilO 351713..352453 (+) 741 WP_191108966.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC769_RS01665 (IC769_01665) pilP 352464..352991 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC769_RS01670 (IC769_01670) pilQ 353053..355179 (+) 2127 WP_004705194.1 type IV pilus secretin PilQ family protein Machinery gene
  IC769_RS01675 (IC769_01675) aroK 355191..355760 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC769_RS01680 (IC769_01680) aroB 355789..356871 (+) 1083 WP_004705197.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27850.51 Da        Isoelectric Point: 4.8227

>NTDB_id=483996 IC769_RS01660 WP_191108966.1 351713..352453(+) (pilO) [Acinetobacter seifertii strain AS23]
MSQDELQELSLEQTSSKNKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEVFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDSKSDIPVLNYSIKAKTYRYVEATDTAKQSTQAPTTPASTS
ANVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=483996 IC769_RS01660 WP_191108966.1 351713..352453(+) (pilO) [Acinetobacter seifertii strain AS23]
ATGAGTCAAGATGAACTTCAAGAATTATCATTAGAGCAAACATCTTCAAAGAACAAGAAATTTAATCTCGATAAATTCCT
TCAACAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCCATATCTGTAAAAATTACTTGTTGGATTTTTATTT
TCTTTGCTGTATTAGCCTTGGGTTATTTTATTGCCATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCTCAGGAA
AGTAACTTGTTAAACGAATTTCGAGAAAAAGATTCGAAATTACGTAACTTGCAGCAGTATCAAGTTCAACTTCAGGAGAT
GCAAGCAAATTTTAATCAACAATTAGAGCAGTTGCCTAAAGAAACAGAGATTCCTAGTTTAGTTGAAGATATCAATTTAA
CGGGTGTGAACTCAGGATTGAAATTTAAAAATATTCGCTTGGAGAATGAAGTAAAACAGGAAGTCTTTATTGAACAACCG
ATTGCGATAGAAGCCACAGGTGATTATCACGCTTTTGGAGCTTTTGTGAGTAGTATTGCTGCGTTGCCGCGTATCGTAAC
CATGCACGACTTTACTGTTGATGTATCTCCAGCTAAAGACAGCAAGTCAGATATTCCTGTATTGAACTATTCTATTAAAG
CGAAAACCTATCGTTATGTAGAAGCAACAGATACAGCGAAGCAATCGACCCAAGCTCCAACAACACCTGCTTCAACTAGC
GCTAATGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

92.276

100

0.923
  comO Acinetobacter baylyi ADP1

68.465

97.967

0.671