Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC776_RS16675 Genome accession   NZ_CP061646
Coordinates   3592484..3594610 (-) Length   708 a.a.
NCBI ID   WP_191012244.1    Uniprot ID   A0A7H2NM86
Organism   Acinetobacter seifertii strain AS39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3587484..3599610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS16660 (IC776_16660) - 3589902..3590776 (-) 875 Protein_3268 hypothetical protein -
  IC776_RS16665 (IC776_16665) aroB 3590792..3591874 (-) 1083 WP_191012243.1 3-dehydroquinate synthase -
  IC776_RS16670 (IC776_16670) aroK 3591903..3592472 (-) 570 WP_004705195.1 shikimate kinase AroK -
  IC776_RS16675 (IC776_16675) pilQ 3592484..3594610 (-) 2127 WP_191012244.1 type IV pilus secretin PilQ family protein Machinery gene
  IC776_RS16680 (IC776_16680) pilP 3594672..3595199 (-) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC776_RS16685 (IC776_16685) pilO 3595210..3595950 (-) 741 WP_191012245.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC776_RS16690 (IC776_16690) pilN 3595947..3596591 (-) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC776_RS16695 (IC776_16695) pilM 3596591..3597649 (-) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76547.90 Da        Isoelectric Point: 6.7710

>NTDB_id=483831 IC776_RS16675 WP_191012244.1 3592484..3594610(-) (pilQ) [Acinetobacter seifertii strain AS39]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDTRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTANKPIPVAAAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDAYNDKDAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSTSASYKVPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDEQAKALAQTIKLAPIQTDYIRLSYAKAIDVLKIIEDSRDGKGAAANHTANSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLRDPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYQTTTNSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGAAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=483831 IC776_RS16675 WP_191012244.1 3592484..3594610(-) (pilQ) [Acinetobacter seifertii strain AS39]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAATCCTTCGCGTTTAATACTAGATTTTGATAAGGCGCAACAAAGTTTAAAGCAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGATACGCGTTCTCGTTTAACCGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACCCGCGTGGAAGGCAATACTTTTATCCTAAAAATTAATTCAGCTCAAACAGCGAATAAGCCGA
TACCAGTAGCTGCCGCACAACCACAAGGTGTGTCAAATATTGGTTTTCAGCGTGGTAGTCAGGGGGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACGCCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACATTGGGCACAAA
AATTCCGACACATTTAGCACGTCGTTTAAATGTAAATGATTTTGCAACGCCAGTTTCAAGTATAGATGCTTACAATGATA
AAGATGCTGGTGTAATCACAATTCAGTCATCTGGTAGCTATGAATATATGGCGTATCAGGCTGAAAATAAGCTCACTATT
AGTTTGAAACGTCCACAAGACAAAAGTACATCGGCTTCGTATAAAGTACCAAGTTATTCTGGTAATAAGCTTTCGTTAGA
TTTTCAAGATATTGAAGTACGCCGTGTTCTACAATTGTTGGCTGATTTTACAGGCATCAATATGGTAGCTGCTGATAGTG
TGCAAGGTAATATCACGCTACGCTTGAAAGATGTACCTTGGGATCAAGCACTTGATATTATTTTAAAGACGAAAAATCTT
GATAAAAGACGTAACGGGAATGTGATTTGGATTGCTCCAGTTGCTGAGTTAATCAAAGCAGAGGATGAACAGGCTAAAGC
ATTAGCACAAACAATTAAGTTGGCTCCAATTCAAACAGATTATATCCGCTTGAGTTATGCGAAAGCGATTGATGTACTAA
AAATAATCGAAGATTCTCGAGATGGAAAAGGAGCAGCCGCAAATCATACCGCAAACTCTGATTCTCTTGCGTTGGAGAGT
TTATTAAGTTCACGTGGTAGTGCTGTTGCTGATACCCGGACTAATACTTTGATTGTAAATGATACAGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAACTACTTGATGTGCAAGTTAAACAGGTGATGGTTGAAGCACGTATTGTGAGAGCCTCTA
CGTCATTTACCAAAGAACTTGGAGTGAAGTGGGGTATTCTTTCACAAGGTATTACTAATAATAAAAATTTATTGGTTGGT
GGTAGTGAAACAACTTTATGGAATTTACGTGACCCTAAAAAAGATGAAACTACTGGAGGCTATAAATATACCATTGAACG
TCCAGATAACTTAAACGTTGATTTGGGAGTCTCGAATCCGGCGGGAAGTATTGCCTTTGGTCTTATCAGTATGTCTGACT
TTATGTTAGATCTTGAACTCTCAGCTTTACAGGCTGATGGTTATGGTGAGGTGATTTCAACCCCTAAAGTCATGACTGCC
GATAAGCAAACTGCGAAAGTTGCAACGGGTCAACAAGTTCCATATCAGACTACAACGAATTCTGGTGCGGGTTCAACAGC
AACAACATCATTTAAAGATGCTCTTTTAAGTCTTGATGTTACGCCTAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TAGATATTTCTAAGGACTCTGTGGCAGGTGCAGCACCAAATGGTGAGTTAATTCTGAATAAGAATAATATTAATACCAAT
GTGCTGGTTGATAATGGAGAAACCGTCATTTTAGGTGGTGTATTCGAGCAAACAACGACAAATACCCAAACTAAAGTTCC
TTTCTTTGGGGATATTCCTTTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTT
TCGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

AMIN domain (AMIN)

(39-121)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2NM86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

88.627

100

0.903
  pilQ Acinetobacter baumannii strain A118

88.488

100

0.901
  comQ Acinetobacter baylyi ADP1

73.007

100

0.737
  pilQ Pseudomonas aeruginosa PAK

39.972

99.294

0.397