Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC776_RS16690 Genome accession   NZ_CP061646
Coordinates   3595947..3596591 (-) Length   214 a.a.
NCBI ID   WP_077163636.1    Uniprot ID   A0A2M8MMB9
Organism   Acinetobacter seifertii strain AS39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3590947..3601591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS16670 (IC776_16670) aroK 3591903..3592472 (-) 570 WP_004705195.1 shikimate kinase AroK -
  IC776_RS16675 (IC776_16675) pilQ 3592484..3594610 (-) 2127 WP_191012244.1 type IV pilus secretin PilQ family protein Machinery gene
  IC776_RS16680 (IC776_16680) pilP 3594672..3595199 (-) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC776_RS16685 (IC776_16685) pilO 3595210..3595950 (-) 741 WP_191012245.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC776_RS16690 (IC776_16690) pilN 3595947..3596591 (-) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC776_RS16695 (IC776_16695) pilM 3596591..3597649 (-) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC776_RS16700 (IC776_16700) ponA 3597811..3600366 (+) 2556 WP_174722665.1 penicillin-binding protein PBP1a -
  IC776_RS16705 (IC776_16705) - 3600384..3601202 (-) 819 WP_396021016.1 putative RNA methyltransferase -
  IC776_RS16710 (IC776_16710) - 3601211..3601543 (-) 333 WP_191012247.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24113.45 Da        Isoelectric Point: 5.1326

>NTDB_id=483834 IC776_RS16690 WP_077163636.1 3595947..3596591(-) (pilN) [Acinetobacter seifertii strain AS39]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDNYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483834 IC776_RS16690 WP_077163636.1 3595947..3596591(-) (pilN) [Acinetobacter seifertii strain AS39]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAAAGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCACAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTAAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATAATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2M8MMB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696