Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC776_RS16680 Genome accession   NZ_CP061646
Coordinates   3594672..3595199 (-) Length   175 a.a.
NCBI ID   WP_004705193.1    Uniprot ID   N8SH39
Organism   Acinetobacter seifertii strain AS39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3589672..3600199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS16660 (IC776_16660) - 3589902..3590776 (-) 875 Protein_3268 hypothetical protein -
  IC776_RS16665 (IC776_16665) aroB 3590792..3591874 (-) 1083 WP_191012243.1 3-dehydroquinate synthase -
  IC776_RS16670 (IC776_16670) aroK 3591903..3592472 (-) 570 WP_004705195.1 shikimate kinase AroK -
  IC776_RS16675 (IC776_16675) pilQ 3592484..3594610 (-) 2127 WP_191012244.1 type IV pilus secretin PilQ family protein Machinery gene
  IC776_RS16680 (IC776_16680) pilP 3594672..3595199 (-) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC776_RS16685 (IC776_16685) pilO 3595210..3595950 (-) 741 WP_191012245.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC776_RS16690 (IC776_16690) pilN 3595947..3596591 (-) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC776_RS16695 (IC776_16695) pilM 3596591..3597649 (-) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19340.53 Da        Isoelectric Point: 9.4007

>NTDB_id=483832 IC776_RS16680 WP_004705193.1 3594672..3595199(-) (pilP) [Acinetobacter seifertii strain AS39]
MKIKQITLYILACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483832 IC776_RS16680 WP_004705193.1 3594672..3595199(-) (pilP) [Acinetobacter seifertii strain AS39]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCTTGTGCTGCGCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATTGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
CAATAGCCGTGGTCAAATATTAGCTCTCATCCAGACGCCAGATCATCAAGTTGAACGGGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGCCCGACTCAGATTGATTTGGTTGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SH39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703