Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IC778_RS01340 Genome accession   NZ_CP061634
Coordinates   282229..282555 (+) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain AS41     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 277229..287555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC778_RS01315 (IC778_01315) hemC 277847..278764 (+) 918 WP_190977836.1 hydroxymethylbilane synthase -
  IC778_RS01320 (IC778_01320) - 278769..279536 (+) 768 WP_077169905.1 uroporphyrinogen-III synthase -
  IC778_RS01325 (IC778_01325) - 279545..280384 (+) 840 WP_004699197.1 hypothetical protein -
  IC778_RS01330 (IC778_01330) - 280394..281587 (+) 1194 WP_190977837.1 heme biosynthesis protein HemY -
  IC778_RS01335 (IC778_01335) - 281595..282035 (+) 441 WP_004699193.1 acyl-CoA thioesterase -
  IC778_RS01340 (IC778_01340) hns 282229..282555 (+) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  IC778_RS01345 (IC778_01345) gspN 282886..283629 (+) 744 WP_004699190.1 type II secretion system protein N -
  IC778_RS01350 (IC778_01350) - 283629..284465 (+) 837 WP_077169904.1 type II secretion system protein N -
  IC778_RS01355 (IC778_01355) gspD 284507..286783 (+) 2277 WP_077164322.1 type II secretion system secretin GspD -
  IC778_RS01360 (IC778_01360) - 286824..287450 (+) 627 WP_049065291.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=483719 IC778_RS01340 WP_002053185.1 282229..282555(+) (hns) [Acinetobacter seifertii strain AS41]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=483719 IC778_RS01340 WP_002053185.1 282229..282555(+) (hns) [Acinetobacter seifertii strain AS41]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991