Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IC778_RS01180 Genome accession   NZ_CP061634
Coordinates   250065..251633 (-) Length   522 a.a.
NCBI ID   WP_215902045.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS41     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 245065..256633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC778_RS01165 (IC778_01165) gpmI 245868..247415 (+) 1548 WP_151792411.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IC778_RS01170 (IC778_01170) - 247431..248615 (+) 1185 WP_004699262.1 S41 family peptidase -
  IC778_RS01175 (IC778_01175) pilR 248619..250040 (-) 1422 WP_151792410.1 sigma-54-dependent transcriptional regulator Regulator
  IC778_RS01180 (IC778_01180) pilS 250065..251633 (-) 1569 WP_215902045.1 sensor histidine kinase Regulator
  IC778_RS01185 (IC778_01185) - 251644..252279 (-) 636 WP_019457005.1 response regulator -
  IC778_RS01190 (IC778_01190) pbpG 252495..253541 (+) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC778_RS01195 (IC778_01195) thrC 253649..254788 (-) 1140 WP_151792409.1 threonine synthase -
  IC778_RS01200 (IC778_01200) - 254843..256144 (-) 1302 WP_025465069.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59054.27 Da        Isoelectric Point: 6.4469

>NTDB_id=483717 IC778_RS01180 WP_215902045.1 250065..251633(-) (pilS) [Acinetobacter seifertii strain AS41]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQADNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIATQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGELQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQAKRIDSIVQDTLGLARSERTHPIQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVTINIHSQANKIYIDVIDYGEGISKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=483717 IC778_RS01180 WP_215902045.1 250065..251633(-) (pilS) [Acinetobacter seifertii strain AS41]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAGCCGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ATACGCTACTAGGCTACTCAATTGTCAGTCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAACTCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTTTACTAACTTTTTCTGTTGGTGAACCAAATTTACAGCTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTTATTTACCAACGCTTCGTGGGGAGTTTGTTCGACTACAACAATCTAAACACGATTGGGAATAGTGCCTTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGGATTGGTCAAATTGCGGTTCAGCGCTTTAAATTACTTGAAGCTTTGACCTT
TCATCAGTCAGTTGAACTTTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACAACATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGTATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGAATTACAAGAAGGTGACCGATTTAT
TTTTGAGTCCCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCGCAACAAGCACTGACACTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGGCAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAATCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTATTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCCGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATCAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTAATGTCACGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGTATCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-282)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.146

100

0.921