Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   IC781_RS16770 Genome accession   NZ_CP061626
Coordinates   3538946..3539428 (-) Length   160 a.a.
NCBI ID   WP_004884685.1    Uniprot ID   A0A1V0YN91
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3533946..3544428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16735 (IC781_16735) - 3534020..3535054 (+) 1035 WP_191010538.1 lipase secretion chaperone -
  IC781_RS16740 (IC781_16740) - 3535175..3536116 (+) 942 WP_191011548.1 lipase family alpha/beta hydrolase -
  IC781_RS16745 (IC781_16745) rplS 3536169..3536537 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC781_RS16750 (IC781_16750) trmD 3536757..3537512 (-) 756 WP_191010539.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC781_RS16755 (IC781_16755) rimM 3537558..3538106 (-) 549 WP_191010540.1 ribosome maturation factor RimM -
  IC781_RS16760 (IC781_16760) rpsP 3538126..3538377 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC781_RS16765 (IC781_16765) pilE 3538524..3538949 (-) 426 WP_191010541.1 type IV pilin protein Machinery gene
  IC781_RS16770 (IC781_16770) pilY2 3538946..3539428 (-) 483 WP_004884685.1 type IV pilin protein Machinery gene
  IC781_RS16775 (IC781_16775) pilY1 3539441..3543625 (-) 4185 WP_191010542.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17498.71 Da        Isoelectric Point: 9.1549

>NTDB_id=483657 IC781_RS16770 WP_004884685.1 3538946..3539428(-) (pilY2) [Acinetobacter seifertii strain AS48]
MSKYYNLKFNRGFTLIELMVTLLTLAILVAIAVPSYQSYARRATASAAKSEILKLAERLEQHKSRNFTYRGFTTTSVTLT
RGGYTIQITDDTTAGNLLTSSAANGQTWVIRATTTDSRNLNFIAKNSGLRCQSLTATAVDNDCGGTTTCNTCEANSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=483657 IC781_RS16770 WP_004884685.1 3538946..3539428(-) (pilY2) [Acinetobacter seifertii strain AS48]
ATGAGTAAATACTATAATTTGAAGTTCAATCGGGGTTTTACTCTGATTGAACTTATGGTCACTCTTCTTACTTTAGCTAT
TCTTGTTGCTATTGCTGTTCCTTCTTATCAAAGTTATGCCCGTAGAGCTACCGCATCTGCCGCTAAGAGTGAGATTTTAA
AATTAGCTGAGCGATTGGAGCAGCATAAGTCTAGAAATTTTACCTATAGGGGATTTACCACAACCTCTGTAACGTTAACT
CGTGGCGGGTATACGATTCAGATCACTGATGATACGACTGCTGGTAATTTATTAACGAGTTCTGCTGCGAATGGGCAGAC
ATGGGTGATTAGAGCGACTACTACAGATTCCAGAAATCTTAATTTTATTGCTAAAAACTCAGGTTTACGTTGCCAGAGCT
TAACAGCTACTGCTGTTGATAATGATTGTGGTGGGACAACTACATGTAATACATGTGAAGCAAATAGTGAGAGTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0YN91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

83.75

100

0.838
  comE Acinetobacter baylyi ADP1

37.209

100

0.4