Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IC781_RS16780 Genome accession   NZ_CP061626
Coordinates   3543625..3544440 (-) Length   271 a.a.
NCBI ID   WP_191010543.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3538625..3549440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16770 (IC781_16770) pilY2 3538946..3539428 (-) 483 WP_004884685.1 type IV pilin protein Machinery gene
  IC781_RS16775 (IC781_16775) pilY1 3539441..3543625 (-) 4185 WP_191010542.1 PilC/PilY family type IV pilus protein Machinery gene
  IC781_RS16780 (IC781_16780) pilX 3543625..3544440 (-) 816 WP_191010543.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IC781_RS16785 (IC781_16785) pilW 3544437..3545435 (-) 999 WP_191010544.1 PilW family protein Machinery gene
  IC781_RS16790 (IC781_16790) pilV 3545435..3545995 (-) 561 WP_134262473.1 type IV pilus modification protein PilV Machinery gene
  IC781_RS16795 (IC781_16795) fimU 3545989..3546462 (-) 474 WP_191010545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC781_RS16800 (IC781_16800) ispH 3546629..3547579 (-) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC781_RS16805 (IC781_16805) gmk 3547702..3548331 (+) 630 WP_191001035.1 guanylate kinase -
  IC781_RS16810 (IC781_16810) rpoZ 3548404..3548682 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IC781_RS16815 (IC781_16815) - 3548721..3548851 (+) 131 Protein_3303 hypothetical protein -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 28906.77 Da        Isoelectric Point: 7.3229

>NTDB_id=483659 IC781_RS16780 WP_191010543.1 3543625..3544440(-) (pilX) [Acinetobacter seifertii strain AS48]
MTHLRRKYIVQHHQKGATLIVVLIILLIVIAVGVLAIRVAIVSLKVATNSQIGQLNFQSSDTPIQLITQMDPTTLTNISN
VLGAALKENESHPGSEYNFCYKPVSTTVSFAQTRDASLLRAGTANNAVVEGGGVAGFCDLTTDYGSNRQAVVTQIAVSIP
TDAVNDVPGSNLPRGTNASEGTALPKSMLSTQRIRVITTSFLPAYASTSMQTLQADCLSTNSAKISDNFDSSLGNKQTLA
DCLTNHNVPFSTQIQEFNYTNKLTETMAPGS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=483659 IC781_RS16780 WP_191010543.1 3543625..3544440(-) (pilX) [Acinetobacter seifertii strain AS48]
ATGACCCATTTGAGAAGAAAATATATAGTTCAACATCATCAGAAAGGTGCGACGCTTATTGTTGTGCTTATTATTTTGTT
AATTGTTATTGCTGTGGGGGTTTTAGCCATACGAGTGGCTATTGTTTCTTTGAAAGTTGCAACGAATAGCCAAATTGGCC
AATTAAATTTTCAATCTTCTGATACTCCTATACAGCTCATCACACAGATGGATCCAACGACGCTGACAAATATTAGTAAT
GTATTAGGAGCAGCACTCAAAGAAAATGAAAGTCATCCCGGATCTGAATATAATTTTTGCTATAAGCCAGTTTCGACCAC
TGTAAGTTTTGCCCAAACCCGAGATGCGAGTTTACTTCGAGCAGGAACTGCTAACAATGCCGTTGTAGAAGGTGGAGGAG
TAGCTGGCTTTTGTGACCTGACCACTGATTATGGAAGTAATCGTCAAGCTGTCGTTACTCAAATTGCTGTAAGCATTCCA
ACAGATGCTGTTAATGATGTTCCAGGATCAAATTTACCACGTGGAACAAATGCATCTGAAGGTACTGCTTTACCAAAGAG
TATGCTTTCTACACAGCGCATTAGAGTGATTACCACTTCTTTTTTACCTGCTTATGCTTCTACCTCAATGCAAACTTTGC
AAGCAGATTGTTTGAGTACAAATAGTGCCAAGATCAGCGATAACTTTGATAGCTCATTAGGTAATAAACAAACGTTAGCA
GATTGTTTGACAAATCATAACGTACCTTTTAGTACTCAGATTCAAGAATTTAACTATACCAATAAGCTTACTGAAACTAT
GGCGCCAGGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(15-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

81.985

100

0.823