Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC785_RS11530 Genome accession   NZ_CP061603
Coordinates   2356964..2357344 (-) Length   126 a.a.
NCBI ID   WP_019458993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS53     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2351964..2362344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC785_RS11500 (IC785_11500) tadA 2351971..2352474 (-) 504 WP_031944487.1 tRNA adenosine(34) deaminase TadA -
  IC785_RS11505 (IC785_11505) - 2352482..2353606 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  IC785_RS11510 (IC785_11510) ung 2353603..2354316 (-) 714 WP_077168513.1 uracil-DNA glycosylase -
  IC785_RS11515 (IC785_11515) - 2354367..2354963 (-) 597 WP_077168512.1 6-pyruvoyl trahydropterin synthase family protein -
  IC785_RS11520 (IC785_11520) gspK 2355193..2356149 (-) 957 WP_077168511.1 type II secretion system minor pseudopilin GspK -
  IC785_RS11525 (IC785_11525) xcpW 2356149..2356964 (-) 816 WP_077168510.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC785_RS11530 (IC785_11530) xcpV 2356964..2357344 (-) 381 WP_019458993.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC785_RS11535 (IC785_11535) - 2357334..2357885 (-) 552 WP_004701984.1 type II secretion system protein -
  IC785_RS11540 (IC785_11540) - 2357895..2358503 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IC785_RS11545 (IC785_11545) - 2358541..2359314 (-) 774 WP_077168509.1 TatD family hydrolase -
  IC785_RS11550 (IC785_11550) - 2359332..2359673 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  IC785_RS11555 (IC785_11555) - 2359686..2360666 (-) 981 WP_077168508.1 DNA polymerase III subunit delta' -
  IC785_RS11560 (IC785_11560) kdsB 2360678..2361439 (-) 762 WP_190980250.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.19 Da        Isoelectric Point: 9.4463

>NTDB_id=483520 IC785_RS11530 WP_019458993.1 2356964..2357344(-) (xcpV) [Acinetobacter seifertii strain AS53]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=483520 IC785_RS11530 WP_019458993.1 2356964..2357344(-) (xcpV) [Acinetobacter seifertii strain AS53]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.032

100

0.96