Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | AVCA_RS09185 | Genome accession | NC_021149 |
| Coordinates | 1995520..1995852 (+) | Length | 110 a.a. |
| NCBI ID | WP_012700623.1 | Uniprot ID | C1DEM9 |
| Organism | Azotobacter vinelandii CA | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1990520..2000852
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVCA_RS09165 (AvCA_20030) | - | 1990888..1991115 (+) | 228 | WP_012700619.1 | hypothetical protein | - |
| AVCA_RS09170 (AvCA_20040) | acnA | 1991112..1993799 (-) | 2688 | WP_012700620.1 | aconitate hydratase AcnA | - |
| AVCA_RS09175 (AvCA_20050) | rlmM | 1993977..1995038 (+) | 1062 | WP_012700621.1 | 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM | - |
| AVCA_RS09180 (AvCA_20060) | tusA | 1995091..1995348 (+) | 258 | WP_012700622.1 | sulfurtransferase TusA | - |
| AVCA_RS09185 (AvCA_20070) | comE1/comEA | 1995520..1995852 (+) | 333 | WP_012700623.1 | ComEA family DNA-binding protein | Machinery gene |
| AVCA_RS09195 (AvCA_20090) | - | 1996177..1997373 (-) | 1197 | WP_012700624.1 | amino acid aminotransferase | - |
| AVCA_RS09200 (AvCA_20100) | uvrB | 1997671..1999680 (+) | 2010 | WP_012700625.1 | excinuclease ABC subunit UvrB | Machinery gene |
Sequence
Protein
Download Length: 110 a.a. Molecular weight: 11331.04 Da Isoelectric Point: 8.6190
>NTDB_id=48348 AVCA_RS09185 WP_012700623.1 1995520..1995852(+) (comE1/comEA) [Azotobacter vinelandii CA]
MRKNPFFTLLLALLASVSVAASAAEAPKTGGAKPATVQPAQPVATVKVDLNAADAATLERDLLGIGPAKAQAIVDYRQAH
GPFASVDELLEVKGIGAAILDKNRDRLSAN
MRKNPFFTLLLALLASVSVAASAAEAPKTGGAKPATVQPAQPVATVKVDLNAADAATLERDLLGIGPAKAQAIVDYRQAH
GPFASVDELLEVKGIGAAILDKNRDRLSAN
Nucleotide
Download Length: 333 bp
>NTDB_id=48348 AVCA_RS09185 WP_012700623.1 1995520..1995852(+) (comE1/comEA) [Azotobacter vinelandii CA]
ATGCGCAAGAACCCGTTTTTCACCCTCCTGCTGGCTCTGCTGGCCAGCGTTTCCGTCGCCGCCTCGGCCGCGGAGGCGCC
CAAGACCGGGGGGGCCAAGCCCGCCACGGTCCAGCCTGCCCAGCCGGTTGCCACGGTCAAGGTCGATCTCAATGCCGCCG
ATGCGGCAACGCTCGAGCGCGACCTGCTGGGAATCGGCCCCGCCAAGGCCCAGGCCATCGTCGATTATCGTCAGGCCCAC
GGGCCTTTCGCATCGGTGGACGAACTGCTGGAGGTCAAGGGAATCGGTGCTGCGATACTGGACAAGAACCGCGATCGCTT
GAGCGCCAACTGA
ATGCGCAAGAACCCGTTTTTCACCCTCCTGCTGGCTCTGCTGGCCAGCGTTTCCGTCGCCGCCTCGGCCGCGGAGGCGCC
CAAGACCGGGGGGGCCAAGCCCGCCACGGTCCAGCCTGCCCAGCCGGTTGCCACGGTCAAGGTCGATCTCAATGCCGCCG
ATGCGGCAACGCTCGAGCGCGACCTGCTGGGAATCGGCCCCGCCAAGGCCCAGGCCATCGTCGATTATCGTCAGGCCCAC
GGGCCTTTCGCATCGGTGGACGAACTGCTGGAGGTCAAGGGAATCGGTGCTGCGATACTGGACAAGAACCGCGATCGCTT
GAGCGCCAACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.655 |
100 |
0.418 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
42.308 |
94.545 |
0.4 |
| comEA | Vibrio cholerae strain A1552 |
39.623 |
96.364 |
0.382 |
| comEA | Vibrio cholerae C6706 |
39.623 |
96.364 |
0.382 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
40.196 |
92.727 |
0.373 |
| comEA | Vibrio campbellii strain DS40M4 |
39.216 |
92.727 |
0.364 |
| comEA | Acinetobacter baumannii strain A118 |
31.25 |
100 |
0.364 |