Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IC787_RS01260 Genome accession   NZ_CP061598
Coordinates   265426..266847 (-) Length   473 a.a.
NCBI ID   WP_151792410.1    Uniprot ID   A0A7H2QY52
Organism   Acinetobacter seifertii strain AS58     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 260426..271847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC787_RS01245 (IC787_01245) lptG 261480..262550 (+) 1071 WP_039254238.1 LPS export ABC transporter permease LptG -
  IC787_RS01250 (IC787_01250) gpmI 262676..264223 (+) 1548 WP_151792411.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IC787_RS01255 (IC787_01255) - 264239..265422 (+) 1184 Protein_240 S41 family peptidase -
  IC787_RS01260 (IC787_01260) pilR 265426..266847 (-) 1422 WP_151792410.1 sigma-54 dependent transcriptional regulator Regulator
  IC787_RS01265 (IC787_01265) pilS 266872..268440 (-) 1569 WP_215902045.1 PAS domain-containing sensor histidine kinase Regulator
  IC787_RS01270 (IC787_01270) - 268451..269086 (-) 636 WP_019457005.1 response regulator -
  IC787_RS01275 (IC787_01275) pbpG 269302..270348 (+) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC787_RS01280 (IC787_01280) thrC 270456..271595 (-) 1140 WP_151792409.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53225.42 Da        Isoelectric Point: 6.5064

>NTDB_id=483470 IC787_RS01260 WP_151792410.1 265426..266847(-) (pilR) [Acinetobacter seifertii strain AS58]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPINQVHLDQLLQKALNRQQTDQDFAETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPLGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPPKQLSDAAETYLLQQHFPGNVRELRNMIERAITLSDDAQIDVPHLHPAPLRANISSSVPLVSQT
IQNNVTTPQIVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=483470 IC787_RS01260 WP_151792410.1 265426..266847(-) (pilR) [Acinetobacter seifertii strain AS58]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGCT
TAACCGATTTAAATCTACCTGATGGTAGCGGGTTAGACTTAGTCAAACATGTCTCTCAAAACTACCCCAACACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTGAATAAACC
TATTAACCAAGTCCATTTAGATCAGTTATTGCAAAAGGCGCTCAATCGGCAACAAACAGATCAAGACTTTGCAGAAACAG
CGCTAGAAAATAAATTATTAATCGGCCGTTCTCTACCTATTCAACAATTACGCATTGCAATTAAAAAAATTGCTCGCTCA
CAAGCACCTGTATTTGTTACAGGTGAGTCAGGAACAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGTTGAGTAACCG
TAGTGAAGGTCCTTTTATTGCAATTAACTGCGGCGCCATTCCAACTGAACTCATGGAAAGTGAGCTGTTTGGACATAAAA
AAGGCAGTTTTACTGGGGCAACTCAAGATAAACAGGGCCTGATTTTATCGGCTCACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGCATGCAAGTCAAACTACTGCGTGCGGTACAGGAAAAAAAGATCCGTCCTCTCGGTTCCGA
TCAGGAAATTGATGTTGATTTCCGTGTCATTAGTGCGAGTCATCAAGACTTGGATTTATTGGTTAGACAAGGCAAATTCC
GTCAGGATTTGTTTTTCCGTATCCATGTTATGGATTTGATGTTACCACCCCTACGAGAACGTGGCGAAGATGTCCTTTTA
CTTGCAAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACACCACCCAAACAATTAAGCGACGCAGCCGAGACTTA
TCTCTTACAGCAACACTTTCCTGGCAATGTTCGCGAATTAAGAAACATGATTGAGCGAGCAATCACCCTAAGTGACGATG
CTCAAATTGATGTACCACACTTACATCCAGCGCCATTAAGAGCAAATATCTCTAGCTCAGTACCATTGGTGTCTCAGACT
ATACAAAATAACGTGACAACGCCTCAAATTGTAAAAAAATTGCCAACTGAAGGATTGGAGCGTTATTTAGAGAACATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATAGAACTTTAGCAGCAAAAAAACTAGGAATGACGTTTC
GTTCTTTACGTTATCGTTTGAAAAAATTTGGCTTAGACACCGAGACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2QY52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

93.446

100

0.934
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488