Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ICJ70_RS19050 Genome accession   NZ_CP061203
Coordinates   3693990..3695249 (-) Length   419 a.a.
NCBI ID   WP_054550950.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain NEB659     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3688990..3700249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ70_RS19030 (ICJ70_18845) - 3689034..3689735 (-) 702 WP_337976162.1 CpsD/CapB family tyrosine-protein kinase -
  ICJ70_RS19035 (ICJ70_18850) - 3689735..3690463 (-) 729 WP_257521317.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  ICJ70_RS19040 (ICJ70_18855) rny 3690692..3692251 (-) 1560 WP_004224930.1 ribonuclease Y -
  ICJ70_RS19045 (ICJ70_18860) recA 3692767..3693828 (-) 1062 WP_274771982.1 recombinase RecA Machinery gene
  ICJ70_RS19050 (ICJ70_18865) cinA 3693990..3695249 (-) 1260 WP_054550950.1 competence/damage-inducible protein A Machinery gene
  ICJ70_RS19055 (ICJ70_18870) pgsA 3695266..3695844 (-) 579 WP_004224936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ICJ70_RS19060 (ICJ70_18875) - 3695892..3696821 (-) 930 WP_175400707.1 helix-turn-helix domain-containing protein -
  ICJ70_RS19065 (ICJ70_18880) - 3696838..3697623 (-) 786 WP_026023397.1 DUF3388 domain-containing protein -
  ICJ70_RS19070 (ICJ70_18885) - 3697840..3698097 (-) 258 WP_004224939.1 DUF3243 domain-containing protein -
  ICJ70_RS19075 (ICJ70_18890) - 3698143..3698871 (-) 729 WP_337976163.1 SDR family oxidoreductase -
  ICJ70_RS19080 (ICJ70_18895) - 3698868..3700169 (-) 1302 WP_337976164.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45204.58 Da        Isoelectric Point: 4.7703

>NTDB_id=481316 ICJ70_RS19050 WP_054550950.1 3693990..3695249(-) (cinA) [Lysinibacillus capsici strain NEB659]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQNILDAQTNPTVAPLASDGEVTLRVTAKAATEQQAGQLIKAKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLGISQE
LIDTHGVVSAECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=481316 ICJ70_RS19050 WP_054550950.1 3693990..3695249(-) (cinA) [Lysinibacillus capsici strain NEB659]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
CCAGCTATCCGAGCTTGGCATCAACGTTTTTTATCATACCGTGGTAGGCGATAATGCAAAGCGTTTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTCATTATTTTTTCGGGAGGACTCGGTCCAACAAAAGATGATTTAACGAAGGAAACG
ATTGCACGTCATCTTGGTGTTTCTCTTGAGTTTGATGAAGTAGCATTGACGTATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAACAGGCATTAATTTTAGCTGGGAGTGAAGTATTAGCTAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATCGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTTGCTGCGATGCTTAACGATGGAGGGATCATTGCATCACATGTTATGCGATTTTATGG
AATTGGTGAGGCTGAGCTTGAAGTACAAGTTCAAAATATTTTAGATGCACAAACCAATCCAACAGTTGCTCCACTTGCTT
CTGATGGTGAGGTAACGTTACGCGTAACAGCTAAAGCAGCAACAGAGCAGCAAGCTGGGCAGCTTATTAAGGCAAAGGTT
GCAGAAATCCAAGCCCTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCCCTTGCCTCAAAAACGGTAGAAATGCT
ACTGGATAATGAGCTAACAATTGCGGCTGCAGAAAGTTTAACTGCTGGTTTATTTCAATCTGAGCTTGCGGAAATTCCTG
GGGTAGGCAATGCGCTTATAGGAGGCGTTGTTACCTATGCAGCAGATGCGAAAGTAAAACAGCTAGGCATTTCACAAGAA
TTAATTGATACACATGGTGTTGTGAGTGCTGAATGCGCAGCGGCAATGGCAAGTGCTGTTCGTGAGAAATTTGCTACAAA
TATTGGGATTGGCCTTACAGGAGAAGCAGGCCCCACTGCGCATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATAAATGATGAGGAGCCGCTTACATATTTACTTCATTTATCAGGCATGCGTAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGCCATTATTTAATGCAGCTTTTAGAAGAACGTGGCTACACAAAACGTTATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.184

98.329

0.513
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408
  cinA Streptococcus mitis NCTC 12261

44.386

91.408

0.406
  cinA Streptococcus mutans UA159

44.063

90.453

0.399