Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   J6M09_RS11710 Genome accession   NZ_CP072190
Coordinates   2419756..2420430 (-) Length   224 a.a.
NCBI ID   WP_004917707.1    Uniprot ID   E4TE06
Organism   Riemerella anatipestifer strain 20190305E2-2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2414756..2425430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M09_RS11680 (J6M09_11675) - 2415587..2416024 (+) 438 WP_064970313.1 VOC family protein -
  J6M09_RS11685 (J6M09_11680) - 2416193..2416651 (+) 459 WP_064970428.1 hypothetical protein -
  J6M09_RS11690 (J6M09_11685) - 2416919..2417620 (+) 702 WP_153926899.1 hypothetical protein -
  J6M09_RS11695 (J6M09_11690) - 2417687..2418250 (+) 564 WP_064970430.1 hypothetical protein -
  J6M09_RS12160 - 2418325..2418660 (+) 336 WP_225908235.1 hypothetical protein -
  J6M09_RS11705 (J6M09_11700) - 2418984..2419688 (+) 705 WP_214244214.1 M949_RS01915 family surface polysaccharide biosynthesis protein -
  J6M09_RS11710 (J6M09_11705) clpP 2419756..2420430 (-) 675 WP_004917707.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  J6M09_RS11715 (J6M09_11710) dnaG 2420510..2422435 (-) 1926 WP_153929496.1 DNA primase -
  J6M09_RS11720 (J6M09_11715) - 2422451..2423128 (-) 678 WP_004917711.1 DedA family protein -
  J6M09_RS11725 (J6M09_11720) prfB 2423206..2424318 (-) 1113 WP_064970451.1 peptide chain release factor 2 -
  J6M09_RS11730 (J6M09_11725) lgt 2424479..2425330 (-) 852 WP_214244216.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25047.75 Da        Isoelectric Point: 4.9641

>NTDB_id=481093 J6M09_RS11710 WP_004917707.1 2419756..2420430(-) (clpP) [Riemerella anatipestifer strain 20190305E2-2]
MDIKKEFRDFSVKHLGNNGLATDQYMGTFNPTNLTPYIMEERRMNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLL
FLESADPTKDIQIYINSPGGSVYAGLGIYDTMQIIKPDVATICTGMAASMGAVLLVAGEKGKRSALKHSRVMIHQPSGGA
QGVASDMEINLREMLKLKKELYDIISEHSGQSYEWVEKSSDRDYWMTSEEAKEFGMIDEVLARK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=481093 J6M09_RS11710 WP_004917707.1 2419756..2420430(-) (clpP) [Riemerella anatipestifer strain 20190305E2-2]
ATGGATATTAAAAAAGAATTTAGAGATTTTTCGGTAAAGCACCTAGGAAATAATGGACTAGCTACCGACCAATATATGGG
GACTTTCAACCCAACCAACCTTACACCATACATTATGGAGGAACGCCGTATGAATGTAGCACAAATGGACGTTTTTTCTA
GATTGATGATGGATAGAATCATCTTTTTAGGAACTGGGATAGACGACCAAGTGGCAAATATTGTAACGGCTCAGCTTTTA
TTTTTAGAAAGTGCAGACCCTACTAAAGATATTCAGATTTACATTAACTCTCCTGGCGGAAGCGTATATGCAGGGCTAGG
AATTTATGACACTATGCAAATCATTAAACCAGATGTAGCTACTATCTGTACGGGTATGGCTGCTTCTATGGGAGCTGTAC
TTCTTGTAGCGGGTGAAAAGGGTAAACGCTCTGCTCTTAAACATTCTAGAGTAATGATACACCAACCTAGTGGCGGAGCT
CAAGGTGTGGCTAGCGATATGGAAATCAACCTTAGAGAAATGCTTAAGCTAAAGAAAGAGCTTTATGATATTATCTCTGA
ACATTCTGGACAATCTTATGAATGGGTTGAAAAATCTTCTGATAGAGATTACTGGATGACCTCTGAAGAAGCTAAAGAAT
TCGGAATGATAGACGAAGTTCTAGCTAGAAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(48-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TE06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.556

84.375

0.469
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.632

84.821

0.446
  clpP Streptococcus pneumoniae D39

47.15

86.161

0.406
  clpP Streptococcus pneumoniae R6

47.15

86.161

0.406
  clpP Streptococcus pneumoniae TIGR4

47.15

86.161

0.406
  clpP Streptococcus pneumoniae Rx1

47.15

86.161

0.406
  clpP Lactococcus lactis subsp. cremoris KW2

47.368

84.821

0.402
  clpP Streptococcus thermophilus LMG 18311

45.078

86.161

0.388
  clpP Streptococcus thermophilus LMD-9

45.078

86.161

0.388
  clpP Streptococcus mutans UA159

45.55

85.268

0.388
  clpP Streptococcus pyogenes MGAS315

45.263

84.821

0.384
  clpP Streptococcus pyogenes JRS4

45.263

84.821

0.384
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.263

84.821

0.384