Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IAU66_RS15330 Genome accession   NZ_CP061168
Coordinates   3133938..3134582 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain T-5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3128938..3139582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS15295 - 3130123..3130554 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  IAU66_RS15300 - 3130554..3130895 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  IAU66_RS15305 - 3130888..3132369 (+) 1482 WP_014305717.1 Na+/H+ antiporter subunit D -
  IAU66_RS15310 - 3132375..3132851 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  IAU66_RS15315 - 3132851..3133135 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  IAU66_RS15320 mnhG 3133119..3133493 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  IAU66_RS15325 - 3133533..3133916 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  IAU66_RS15330 comA 3133938..3134582 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  IAU66_RS15335 comP 3134663..3136954 (-) 2292 WP_014305719.1 histidine kinase Regulator
  IAU66_RS15340 comX 3136966..3137130 (-) 165 WP_007613432.1 competence pheromone ComX -
  IAU66_RS15345 - 3137130..3138041 (-) 912 WP_014305720.1 polyprenyl synthetase family protein -
  IAU66_RS15350 degQ 3138193..3138333 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  IAU66_RS15355 - 3138799..3139140 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=481093 IAU66_RS15330 WP_003152052.1 3133938..3134582(-) (comA) [Bacillus amyloliquefaciens strain T-5]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=481093 IAU66_RS15330 WP_003152052.1 3133938..3134582(-) (comA) [Bacillus amyloliquefaciens strain T-5]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864