Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   J6M13_RS09120 Genome accession   NZ_CP072186
Coordinates   1955825..1956499 (-) Length   224 a.a.
NCBI ID   WP_004917707.1    Uniprot ID   E4TE06
Organism   Riemerella anatipestifer strain 20190403E1-1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1950825..1961499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M13_RS09085 (J6M13_09090) - 1951241..1951699 (+) 459 WP_004917694.1 hypothetical protein -
  J6M13_RS09090 (J6M13_09095) - 1951759..1952307 (+) 549 WP_004917696.1 hypothetical protein -
  J6M13_RS09095 (J6M13_09100) - 1952332..1953030 (+) 699 WP_004917698.1 hypothetical protein -
  J6M13_RS09100 (J6M13_09105) - 1953080..1953886 (+) 807 WP_004917700.1 hypothetical protein -
  J6M13_RS09105 (J6M13_09110) - 1953903..1954289 (+) 387 WP_004917702.1 hypothetical protein -
  J6M13_RS09110 (J6M13_09115) - 1954386..1955024 (+) 639 WP_004917704.1 hypothetical protein -
  J6M13_RS09115 (J6M13_09120) - 1955051..1955755 (+) 705 WP_004917706.1 M949_RS01915 family surface polysaccharide biosynthesis protein -
  J6M13_RS09120 (J6M13_09125) clpP 1955825..1956499 (-) 675 WP_004917707.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  J6M13_RS09125 (J6M13_09130) dnaG 1956579..1958501 (-) 1923 WP_013447217.1 DNA primase -
  J6M13_RS09130 (J6M13_09135) - 1958517..1959194 (-) 678 WP_004917711.1 DedA family protein -
  J6M13_RS09135 (J6M13_09140) prfB 1959272..1960384 (-) 1113 WP_037249374.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25047.75 Da        Isoelectric Point: 4.9641

>NTDB_id=480997 J6M13_RS09120 WP_004917707.1 1955825..1956499(-) (clpP) [Riemerella anatipestifer strain 20190403E1-1]
MDIKKEFRDFSVKHLGNNGLATDQYMGTFNPTNLTPYIMEERRMNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLL
FLESADPTKDIQIYINSPGGSVYAGLGIYDTMQIIKPDVATICTGMAASMGAVLLVAGEKGKRSALKHSRVMIHQPSGGA
QGVASDMEINLREMLKLKKELYDIISEHSGQSYEWVEKSSDRDYWMTSEEAKEFGMIDEVLARK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=480997 J6M13_RS09120 WP_004917707.1 1955825..1956499(-) (clpP) [Riemerella anatipestifer strain 20190403E1-1]
ATGGATATTAAAAAGGAATTTAGAGATTTTTCGGTAAAGCACCTAGGAAATAATGGATTAGCTACCGACCAATATATGGG
GACTTTTAACCCAACCAACCTTACACCATACATTATGGAGGAACGCCGTATGAATGTAGCACAAATGGACGTTTTTTCTA
GATTGATGATGGATAGAATCATCTTTTTAGGTACTGGGATAGACGACCAAGTGGCAAATATTGTAACGGCTCAACTTTTA
TTTTTAGAGAGTGCAGACCCTACTAAAGATATTCAGATTTACATTAACTCTCCTGGCGGAAGTGTATATGCAGGGCTAGG
AATTTATGATACGATGCAAATCATTAAGCCTGATGTAGCTACTATCTGTACAGGTATGGCTGCTTCTATGGGAGCTGTAC
TTCTTGTAGCGGGTGAAAAGGGTAAACGCTCTGCTCTTAAACATTCTAGAGTGATGATACACCAACCTAGTGGAGGAGCT
CAAGGTGTGGCTAGCGATATGGAAATCAATCTTAGAGAAATGCTGAAGCTAAAGAAGGAACTTTATGATATTATCTCTGA
ACATTCTGGACAATCTTATGAATGGGTTGAAAAATCTTCTGATAGAGATTACTGGATGACCTCCGAAGAAGCTAAAGAAT
TCGGAATGATAGACGAAGTTCTAGCTAGAAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(48-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TE06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.556

84.375

0.469
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.632

84.821

0.446
  clpP Streptococcus pneumoniae D39

47.15

86.161

0.406
  clpP Streptococcus pneumoniae R6

47.15

86.161

0.406
  clpP Streptococcus pneumoniae TIGR4

47.15

86.161

0.406
  clpP Streptococcus pneumoniae Rx1

47.15

86.161

0.406
  clpP Lactococcus lactis subsp. cremoris KW2

47.368

84.821

0.402
  clpP Streptococcus thermophilus LMG 18311

45.078

86.161

0.388
  clpP Streptococcus thermophilus LMD-9

45.078

86.161

0.388
  clpP Streptococcus mutans UA159

45.55

85.268

0.388
  clpP Streptococcus pyogenes MGAS315

45.263

84.821

0.384
  clpP Streptococcus pyogenes JRS4

45.263

84.821

0.384
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.263

84.821

0.384