Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   IB936_RS02300 Genome accession   NZ_CP061133
Coordinates   438803..439513 (+) Length   236 a.a.
NCBI ID   WP_002985645.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 433803..444513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB936_RS02275 (IB936_02275) - 433812..434525 (+) 714 WP_302479682.1 MIP/aquaporin family protein -
  IB936_RS02280 (IB936_02280) - 434660..435229 (+) 570 WP_021299212.1 hypothetical protein -
  IB936_RS02285 (IB936_02285) - 435198..436347 (+) 1150 Protein_414 acetyl-CoA C-acyltransferase -
  IB936_RS02290 (IB936_02290) - 436304..437551 (+) 1248 WP_011528374.1 AMP-binding protein -
  IB936_RS02295 (IB936_02295) - 437607..438641 (+) 1035 WP_011528375.1 DUF3114 domain-containing protein -
  IB936_RS02300 (IB936_02300) vicR 438803..439513 (+) 711 WP_002985645.1 response regulator YycF Regulator
  IB936_RS02305 (IB936_02305) vicK 439506..440858 (+) 1353 WP_002990673.1 cell wall metabolism sensor histidine kinase VicK Regulator
  IB936_RS02310 (IB936_02310) vicX 440862..441671 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  IB936_RS02315 (IB936_02315) rnc 442114..442806 (+) 693 WP_002990670.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27083.99 Da        Isoelectric Point: 4.9038

>NTDB_id=480923 IB936_RS02300 WP_002985645.1 438803..439513(+) (vicR) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=480923 IB936_RS02300 WP_002985645.1 438803..439513(+) (vicR) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
ATGAAAAAAATACTTATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAATTTGACAAAAGAAGGTTATGA
CATTGTTACAGCTTTTGATGGACGCGAAGCGGTAACCATTTTTGAAGAAGAAAAGCCAGATTTAATTATTCTTGATTTGA
TGCTCCCTGAGTTGGACGGTCTTGAAGTAGCCAAGGAAATTCGTAAAACCAGTCATGTCCCGATTATTATGTTGTCGGCT
AAAGATAGTGAGTTTGACAAGGTTATTGGACTTGAAATTGGGGCTGATGATTACGTGACCAAGCCCTTTTCTAATCGGGA
ATTGCTGGCGCGTGTCAAGGCTCATCTGCGTCGTACCGAAACTATTGAAACGGCTGTTGCAGAAGAAAATGCTTCTTCAG
GTACACAGGAACTAACCATTGGTAATTTACAGATTTTACCAGATGCGTTTGTTGCTAAAAAACATGGTCAAGAGGTAGAG
TTGACTCATCGTGAATTTGAACTATTGCATCATCTAGCTAACCATATGGGTCAGGTGATGACACGAGAACACTTATTGGA
AATTGTTTGGGGATATGATTATTTTGGCGATGTGCGCACGGTTGATGTGACTGTTCGTCGTCTCCGTGAAAAAATTGAAG
ACACACCAAGTCGTCCTGAGTATATTTTAACAAGACGTGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.06

99.153

0.784
  covR Streptococcus salivarius strain HSISS4

44.828

98.305

0.441
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

36.91

98.729

0.364