Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J6L78_RS04100 Genome accession   NZ_CP072185
Coordinates   866599..867948 (-) Length   449 a.a.
NCBI ID   WP_013446925.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190109E1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 861599..872948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6L78_RS04080 (J6L78_04085) - 861945..863369 (-) 1425 WP_004918166.1 redoxin domain-containing protein -
  J6L78_RS04085 (J6L78_04090) - 863549..864394 (+) 846 WP_017686105.1 GLPGLI family protein -
  J6L78_RS04090 (J6L78_04095) - 864436..864900 (-) 465 WP_004918163.1 heme-binding domain-containing protein -
  J6L78_RS04095 (J6L78_04100) - 864912..866552 (-) 1641 WP_004918161.1 Ig-like domain-containing protein -
  J6L78_RS04100 (J6L78_04105) radA 866599..867948 (-) 1350 WP_013446925.1 DNA repair protein RadA Machinery gene
  J6L78_RS04105 (J6L78_04110) - 868042..868806 (+) 765 WP_004918157.1 enoyl-CoA hydratase/isomerase family protein -
  J6L78_RS04110 (J6L78_04115) - 868885..871017 (-) 2133 WP_004918155.1 S8 family peptidase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49639.14 Da        Isoelectric Point: 7.2681

>NTDB_id=480925 J6L78_RS04100 WP_013446925.1 866599..867948(-) (radA) [Riemerella anatipestifer strain 20190109E1-1]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDKNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDVAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHDIKIVEVSKIEDFHEEIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=480925 J6L78_RS04100 WP_013446925.1 866599..867948(-) (radA) [Riemerella anatipestifer strain 20190109E1-1]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCACAACATTCCAAATGGCACGGGCAATGCCAAAATTG
TGGACAATGGAATACTTTAGTGGAAGAGATTGCAGAAAAAACAACCTCTAAAAATTATGCAGGAGATTTTGGAAGACAAC
ACCTCATCAATATCATAGAAGTAGAAACACAAGCTGAACAACGCATTAAAACTCCAAGCGAAGAACTTAACAGAGTTTTG
GGTGGCGGTATTGTTTTAGGTTCGGTAACTCTTATTGGCGGAGAACCAGGTATAGGGAAATCTACACTACTATTGCAATT
AGCCCTTAAAATGAAGAAAAAAATCCTCTATGTTTCTGGGGAAGAAAGTGCCTCTCAAATCAAAATGAGAGCAGATAGAC
TAACGGAACTCCAAAATCCGAATTGTTTTTTATACACCGAAACTTCAATAGAGAAAATTTTACACGAAGCCAAAAAACTT
CAGCCTGATTTTATGATTGTGGATTCCATACAAACTCTGCACTCGCAGGTGATGGAGAGTTCCCCAGGTACGGTATCTCA
GATTAGAGAATGTGCTTCGGAAGTTATAAAGTTTGCAAAAGCGACTAACACGCCTGTTTTTTTAGTGGGACACATTACTA
AAGATGGACAAATAGCTGGACCAAAAGTATTGGAGCATATGGTAGATGTAGTTCTTAATTTTGATGGTGATAAAAACCAT
TTGTTTAGACTTTTAAGAGCAAATAAAAATCGTTTTGGTTCTACGGCGGAGATTGGTATTTATGAGATGATTTCGGCAGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACTAAAAAATCTGAGGAATTTTCAGGGAATGCGGTGGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTTGTAAGTACAGCCGTGTATGGTACACCACAGAGAAGT
TCTACGGGGTTTGATGCTAAAAGACTCAATATGCTTTTGGCAGTTTTAGAGAAACGCTCTGGTTTTCAGCTCGGAGCTAA
AGATGTATTTTTAAACATTACAGGAGGTATTAAAACAGACGACCCCGCTCTAGATTTGGCTGTGGTAGCTGCTATCTTAT
CTTCCAACGAGGATGTTGCAGTGTCGGAGCATTATTGTTTTGCTGGGGAAATTGGTCTTAGTGGAGAAATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAATTAGGCTATCATAAAATTTTTGTTTCTAAACAAAATAAGATACC
AAAGAAAAAACACGATATAAAGATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAGATATTTTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(63-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

47.253

100

0.479
  radA Streptococcus pneumoniae Rx1

47.149

100

0.479
  radA Streptococcus pneumoniae D39

47.149

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.479
  radA Streptococcus pneumoniae R6

47.149

100

0.479
  radA Streptococcus mitis SK321

47.02

100

0.474
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.38

96.214

0.465