Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IBZ03_RS08825 Genome accession   NZ_CP061115
Coordinates   1827787..1828392 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain S585     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1822787..1833392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBZ03_RS08805 (IBZ03_08800) - 1823182..1824942 (-) 1761 WP_000156454.1 Lon protease family protein -
  IBZ03_RS08810 (IBZ03_08805) matP 1825128..1825580 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  IBZ03_RS08815 (IBZ03_08810) ompA 1825652..1826704 (-) 1053 WP_001674965.1 porin OmpA -
  IBZ03_RS08820 (IBZ03_08815) sulA 1827061..1827570 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  IBZ03_RS08825 (IBZ03_08820) sxy/tfoX 1827787..1828392 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  IBZ03_RS08830 (IBZ03_08825) yccS 1828379..1830532 (-) 2154 WP_000950880.1 YccS family putative transporter -
  IBZ03_RS08835 (IBZ03_08830) - 1830551..1830997 (-) 447 WP_001261222.1 YccF domain-containing protein -
  IBZ03_RS08840 (IBZ03_08835) helD 1831121..1833175 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=480650 IBZ03_RS08825 WP_001202375.1 1827787..1828392(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain S585]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=480650 IBZ03_RS08825 WP_001202375.1 1827787..1828392(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain S585]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751