Detailed information NTG0479614

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: IBB97_RS09245
• Genome accession: NZ_CP061021
• Coordinates: 1781802..1782230 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 24739
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1776802..1787230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBB97_RS09210 (IBB97_09225)	-	1777064..1777261 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
IBB97_RS09215 (IBB97_09230)	-	1777510..1778703 (-)	1194	WP_014608740.1	acetate kinase	-
IBB97_RS09220 (IBB97_09235)	comYH	1778759..1779715 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
IBB97_RS09225 (IBB97_09240)	comGG	1779760..1780080 (-)	321	WP_278249177.1	competence type IV pilus minor pilin ComGG	-
IBB97_RS09230 (IBB97_09245)	-	1780101..1781036 (-)	936	WP_138496752.1	IS30 family transposase	-
IBB97_RS09235 (IBB97_09250)	comYF	1781119..1781553 (-)	435	WP_138496599.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBB97_RS09240 (IBB97_09255)	comGE	1781537..1781830 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
IBB97_RS09245 (IBB97_09260)	comYD	1781802..1782230 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBB97_RS09250 (IBB97_09265)	comYC	1782190..1782516 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
IBB97_RS09255 (IBB97_09270)	comYB	1782513..1783613 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBB97_RS09260 (IBB97_09275)	comGA/cglA/cilD	1783495..1784436 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
IBB97_RS09265 (IBB97_09280)	-	1784517..1784879 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=479614 IBB97_RS09245 WP_011226626.1 1781802..1782230(-) (comYD) [Streptococcus thermophilus strain 24739]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=479614 IBB97_RS09245 WP_011226626.1 1781802..1782230(-) (comYD) [Streptococcus thermophilus strain 24739]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38