Detailed information NTG0479616

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: IBB97_RS09255
• Genome accession: NZ_CP061021
• Coordinates: 1782513..1783613 (-)
• Length: 366 a.a.
• NCBI ID: WP_116920398.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 24739
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1777513..1788613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBB97_RS09220 (IBB97_09235)	comYH	1778759..1779715 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
IBB97_RS09225 (IBB97_09240)	comGG	1779760..1780080 (-)	321	WP_278249177.1	competence type IV pilus minor pilin ComGG	-
IBB97_RS09230 (IBB97_09245)	-	1780101..1781036 (-)	936	WP_138496752.1	IS30 family transposase	-
IBB97_RS09235 (IBB97_09250)	comYF	1781119..1781553 (-)	435	WP_138496599.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBB97_RS09240 (IBB97_09255)	comGE	1781537..1781830 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
IBB97_RS09245 (IBB97_09260)	comYD	1781802..1782230 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBB97_RS09250 (IBB97_09265)	comYC	1782190..1782516 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
IBB97_RS09255 (IBB97_09270)	comYB	1782513..1783613 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBB97_RS09260 (IBB97_09275)	comGA/cglA/cilD	1783495..1784436 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
IBB97_RS09265 (IBB97_09280)	-	1784517..1784879 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41797.91 Da
• Isoelectric Point: 10.1084

>NTDB_id=479616 IBB97_RS09255 WP_116920398.1 1782513..1783613(-) (comYB) [Streptococcus thermophilus strain 24739]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=479616 IBB97_RS09255 WP_116920398.1 1782513..1783613(-) (comYB) [Streptococcus thermophilus strain 24739]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCAGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGATATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413