Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE2   Type   Regulator
Locus tag   JZ789_RS07520 Genome accession   NZ_CP071806
Coordinates   1515141..1515890 (-) Length   249 a.a.
NCBI ID   WP_170244865.1    Uniprot ID   -
Organism   Streptococcus suis strain GX69     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510141..1520890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ789_RS07515 (JZ789_07430) - 1513928..1514563 (-) 636 WP_024394859.1 hypothetical protein -
  JZ789_RS07520 (JZ789_07435) comE/comE2 1515141..1515890 (-) 750 WP_170244865.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  JZ789_RS07525 (JZ789_07440) - 1515905..1516774 (-) 870 WP_226313481.1 GHKL domain-containing protein -
  JZ789_RS07530 (JZ789_07445) - 1517234..1517389 (-) 156 WP_000794567.1 hypothetical protein -
  JZ789_RS07535 (JZ789_07450) - 1517411..1519560 (-) 2150 Protein_1447 peptide cleavage/export ABC transporter -
  JZ789_RS07540 (JZ789_07455) - 1519763..1519954 (-) 192 WP_002935101.1 hypothetical protein -
  JZ789_RS07545 (JZ789_07460) - 1520043..1520315 (-) 273 WP_002935103.1 DUF3884 family protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 29378.92 Da        Isoelectric Point: 7.7531

>NTDB_id=479004 JZ789_RS07520 WP_170244865.1 1515141..1515890(-) (comE/comE2) [Streptococcus suis strain GX69]
MNIIVLDDNIHHQLRLESALYDVARSLHIHINIECARTIQALREYMNQEDVNQIYFLDLEIGNQKNLGFEIAKEIRNNNP
YAVIIFVTSYSDLMPLVFQYHLSALDFIIKDLKETEFRNRLKQCLEQVIISFKKKSDGELLRYSYQNRTGICIPFSDILF
IQTSVKPHRLIIYTVDFIKEFYGTLNDILDLDSKNYFEKVERSTIINVYNVTEYSSKTREVKFFEGTTCLVSRLRIKDVK
TRLRNKGII

Nucleotide


Download         Length: 750 bp        

>NTDB_id=479004 JZ789_RS07520 WP_170244865.1 1515141..1515890(-) (comE/comE2) [Streptococcus suis strain GX69]
ATGAATATTATTGTTCTGGATGACAATATTCATCATCAGTTGCGACTAGAATCTGCTCTTTATGATGTAGCTCGGTCTTT
ACATATTCATATCAATATTGAATGTGCTAGAACAATACAGGCATTAAGAGAGTATATGAATCAAGAAGATGTAAATCAGA
TATATTTTCTAGATTTAGAAATTGGCAATCAAAAAAATTTAGGTTTTGAGATTGCTAAAGAAATAAGAAATAATAATCCT
TATGCAGTTATTATATTTGTGACTTCATATTCCGACCTGATGCCCCTAGTATTTCAATATCATCTTTCGGCATTAGATTT
TATTATTAAAGATCTTAAAGAAACAGAATTTCGTAATCGGTTAAAGCAGTGTTTGGAACAAGTAATAATTTCATTTAAGA
AAAAATCTGATGGGGAATTGTTAAGATATAGTTACCAGAACAGAACTGGTATCTGCATACCTTTTTCCGATATACTTTTT
ATTCAAACCTCAGTTAAACCGCATCGATTAATTATTTATACAGTAGATTTTATTAAAGAATTTTATGGTACTTTGAATGA
TATTCTAGATTTAGATAGTAAGAATTATTTTGAAAAAGTAGAACGTTCAACAATAATAAATGTGTATAATGTTACTGAGT
ACAGTTCGAAAACAAGAGAAGTAAAATTTTTTGAAGGAACAACATGTCTTGTATCTAGATTGAGAATTAAGGATGTAAAA
ACTAGATTAAGAAATAAAGGAATAATATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-121)

LytTr DNA-binding domain (LytTR)

(152-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE2 Streptococcus gordonii strain NCTC7865

37.349

100

0.373
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

37.349

100

0.373
  comE Streptococcus mitis SK321

36.22

100

0.369
  comE Streptococcus pneumoniae Rx1

36.22

100

0.369
  comE Streptococcus pneumoniae D39

36.22

100

0.369
  comE Streptococcus pneumoniae R6

36.22

100

0.369
  comE Streptococcus pneumoniae TIGR4

36.22

100

0.369
  comE Streptococcus mitis NCTC 12261

36.22

100

0.369
  comE Streptococcus infantis strain Atu-4

36.145

100

0.361