Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LYSZa2_RS10780 Genome accession   NZ_CP071731
Coordinates   2295635..2297128 (+) Length   497 a.a.
NCBI ID   WP_023110533.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LYSZa2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2290635..2302128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSZa2_RS10750 (LYSZa2_10750) - 2290778..2291692 (-) 915 WP_003118059.1 fimbrial protein -
  LYSZa2_RS10755 (LYSZa2_10755) sutA 2292107..2292424 (-) 318 WP_003098240.1 transcriptional regulator SutA -
  LYSZa2_RS10760 (LYSZa2_10760) - 2292502..2292927 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LYSZa2_RS10765 (LYSZa2_10765) - 2293188..2294516 (-) 1329 WP_003098243.1 ammonium transporter -
  LYSZa2_RS10770 (LYSZa2_10770) glnK 2294556..2294894 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  LYSZa2_RS10775 (LYSZa2_10775) - 2295334..2295594 (+) 261 WP_023132376.1 accessory factor UbiK family protein -
  LYSZa2_RS10780 (LYSZa2_10780) comM 2295635..2297128 (+) 1494 WP_023110533.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LYSZa2_RS10785 (LYSZa2_10785) betT 2297253..2299238 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  LYSZa2_RS10790 (LYSZa2_10790) pchP 2299281..2300330 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  LYSZa2_RS10795 (LYSZa2_10795) - 2300481..2301398 (-) 918 WP_003161164.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53055.02 Da        Isoelectric Point: 7.9584

>NTDB_id=478714 LYSZa2_RS10780 WP_023110533.1 2295635..2297128(+) (comM) [Pseudomonas aeruginosa strain LYSZa2]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLKHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=478714 LYSZa2_RS10780 WP_023110533.1 2295635..2297128(+) (comM) [Pseudomonas aeruginosa strain LYSZa2]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGCCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAAGCACTGGCCGCAGCGACCGTTCCG
CCAACCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.186

100

0.567
  comM Vibrio campbellii strain DS40M4

56.74

100

0.567
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.338

100

0.563
  comM Vibrio cholerae strain A1552

56.338

100

0.563
  comM Glaesserella parasuis strain SC1401

55.179

100

0.557
  comM Acinetobacter baylyi ADP1

53.707

100

0.539
  comM Legionella pneumophila str. Paris

49.9

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.469
  comM Helicobacter pylori 26695

38.845

100

0.392