Detailed information NTG0478611

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: H8B22_RS03695
• Genome accession: NZ_CP060820
• Coordinates: 789959..791206 (+)
• Length: 415 a.a.
• NCBI ID: WP_187712773.1
• Uniprot ID: -
• Organism: Agrilutibacter terrestris strain II4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 784959..796206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H8B22_RS03680 (H8B22_03680)	gmd	786072..787166 (-)	1095	WP_187712770.1	GDP-mannose 4,6-dehydratase	-
H8B22_RS03685 (H8B22_03685)	-	787156..788013 (-)	858	WP_187712771.1	glycosyltransferase family 2 protein	-
H8B22_RS03690 (H8B22_03690)	pilB	788174..789892 (+)	1719	WP_187712772.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H8B22_RS03695 (H8B22_03695)	pilC	789959..791206 (+)	1248	WP_187712773.1	type II secretion system F family protein	Machinery gene
H8B22_RS03700 (H8B22_03700)	pilD	791227..792093 (+)	867	WP_187712774.1	A24 family peptidase	Machinery gene
H8B22_RS03705 (H8B22_03705)	coaE	792126..792746 (+)	621	WP_187712775.1	dephospho-CoA kinase	-
H8B22_RS03710 (H8B22_03710)	-	792752..793687 (-)	936	WP_225876270.1	Nudix family hydrolase	-

Sequence

Protein

• Length: 415 a.a.
• Molecular weight: 45056.07 Da
• Isoelectric Point: 9.8550

>NTDB_id=478611 H8B22_RS03695 WP_187712773.1 789959..791206(+) (pilC) [Agrilutibacter terrestris strain II4]
MSAAKTATKPNRPNPLTLFVWEGKDRRGVTMKGEQSAKSANMVRAELRRQGITPDVVKVKPKPLFGAGGGSIKPKDIAIF
SRQLATMMKSGVPIVNSLEIIANGQKNQKMKDLVETLHADIGSGSSIYEAMSKHPVQFDELYRNLVKAGESAGVLETVLD
TIATYKENIESLKGKIKKALFYPATIIAVAILVCGILLVFVVPQFREAFQNYGADLPAFTELVFGLSAFMVRWWWAFALF
AAAAIGGFIFAMKRSPALAHFVDRMMLKLPIVGQVLHNASIARFSRTLAVTFAAGVPLVEALDTVAGATGNQVYEQAVHR
MKNDVAVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLIEPLVMVVIGTMVGAIV
IAMYLPIFKLAMTVG

Nucleotide

• Length: 1248 bp

>NTDB_id=478611 H8B22_RS03695 WP_187712773.1 789959..791206(+) (pilC) [Agrilutibacter terrestris strain II4]
GTGTCCGCAGCCAAGACCGCCACCAAACCCAACCGCCCGAACCCCCTCACCCTGTTTGTCTGGGAAGGCAAGGACCGACG
CGGAGTTACCATGAAGGGGGAGCAGTCCGCCAAGAGCGCCAACATGGTGCGCGCGGAACTGCGTCGCCAAGGAATCACCC
CGGACGTAGTCAAGGTCAAACCCAAGCCACTGTTTGGTGCCGGCGGCGGTTCGATCAAGCCCAAGGACATTGCCATCTTC
AGCCGCCAGCTGGCGACGATGATGAAATCCGGCGTGCCGATCGTGAACTCGCTGGAGATCATCGCCAACGGCCAGAAGAA
CCAGAAGATGAAGGATCTGGTCGAGACCCTGCACGCCGATATCGGCAGTGGCTCATCCATCTACGAGGCGATGAGCAAGC
ACCCGGTGCAGTTCGACGAGCTATACCGGAACCTGGTCAAGGCTGGTGAATCCGCAGGCGTGTTGGAAACGGTGTTGGAC
ACGATTGCCACCTACAAGGAAAACATCGAGTCGCTGAAGGGTAAGATCAAGAAAGCGCTGTTCTACCCTGCCACGATTAT
CGCCGTGGCCATTCTGGTCTGCGGCATCCTGCTGGTATTTGTCGTACCGCAGTTCCGCGAAGCCTTTCAGAATTATGGCG
CAGACCTACCGGCGTTCACTGAGCTTGTCTTCGGCCTATCAGCCTTCATGGTGCGATGGTGGTGGGCGTTTGCGTTGTTC
GCTGCTGCGGCGATTGGCGGCTTCATCTTCGCCATGAAGCGGTCGCCCGCGTTGGCGCATTTCGTCGACCGGATGATGCT
CAAGCTGCCGATTGTCGGCCAGGTGCTTCACAACGCTTCAATCGCTCGATTCTCACGCACCTTGGCGGTAACGTTCGCAG
CTGGCGTACCACTCGTAGAAGCCTTGGACACCGTTGCCGGCGCTACGGGCAACCAAGTTTACGAACAGGCCGTACACCGC
ATGAAGAATGACGTGGCCGTCGGTTATCCGGTCAACGTGGCCATGAAACAGGTCAACCTGTTCCCGCACATGGTGGTCCA
GATGACCGCCATCGGCGAAGAAGCCGGCGCGCTCGACACCATGCTCTTCAAGGTCGCCGAGTTCTACGAGCAGGAAGTGA
ACAATGCAGTCGATGCACTATCGAGCCTGATCGAGCCATTGGTCATGGTGGTCATCGGCACCATGGTCGGTGCGATCGTC
ATCGCCATGTACCTCCCGATCTTCAAGCTGGCCATGACGGTCGGTTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (80-203)

• Type II secretion system (T2SS), protein F (T2SSF) (284-406)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	52.632	96.145	0.506
pilC	Acinetobacter baylyi ADP1	50.602	100	0.506
pilC	Legionella pneumophila strain ERS1305867	50.99	97.349	0.496
pilC	Acinetobacter baumannii D1279779	49.622	95.663	0.475
pilC	Vibrio cholerae strain A1552	40.633	99.036	0.402
pilG	Neisseria gonorrhoeae MS11	41.206	95.904	0.395
pilG	Neisseria meningitidis 44/76-A	40.704	95.904	0.39
pilC	Vibrio campbellii strain DS40M4	40.201	95.904	0.386
pilC	Thermus thermophilus HB27	35.461	100	0.361