Detailed information NTG0478449

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: H9S87_RS15965
• Genome accession: NZ_CP060799
• Coordinates: 3122839..3123525 (-)
• Length: 228 a.a.
• NCBI ID: WP_187704184.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain ONU 554
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3117839..3128525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9S87_RS15930 (H9S87_15930)	fliW	3117972..3118406 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
H9S87_RS15935 (H9S87_15935)	-	3118435..3119013 (-)	579	WP_034660143.1	DUF6470 family protein	-
H9S87_RS15940 (H9S87_15940)	flgL	3119062..3119973 (-)	912	WP_034660144.1	flagellar hook-associated protein FlgL	-
H9S87_RS15945 (H9S87_15945)	flgK	3119983..3121503 (-)	1521	WP_095285727.1	flagellar hook-associated protein FlgK	-
H9S87_RS15950 (H9S87_15950)	-	3121519..3122001 (-)	483	WP_034660146.1	flagellar protein FlgN	-
H9S87_RS15955 (H9S87_15955)	flgM	3122020..3122283 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
H9S87_RS15960 (H9S87_15960)	-	3122363..3122782 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
H9S87_RS15965 (H9S87_15965)	comFC	3122839..3123525 (-)	687	WP_187704184.1	ComF family protein	Machinery gene
H9S87_RS15970 (H9S87_15970)	-	3123522..3123815 (-)	294	WP_060597398.1	late competence development ComFB family protein	-
H9S87_RS15975 (H9S87_15975)	comFA	3123882..3125261 (-)	1380	WP_316250400.1	DEAD/DEAH box helicase	Machinery gene
H9S87_RS15980 (H9S87_15980)	-	3125382..3126224 (-)	843	WP_034660152.1	DegV family protein	-
H9S87_RS15985 (H9S87_15985)	degU	3126442..3127131 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
H9S87_RS15990 (H9S87_15990)	degS	3127196..3128371 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26076.52 Da
• Isoelectric Point: 9.9327

>NTDB_id=478449 H9S87_RS15965 WP_187704184.1 3122839..3123525(-) (comFC) [Bacillus pumilus strain ONU 554]
MICLICEGHFVAAFTWKSLLLLNDDHICIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGVKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=478449 H9S87_RS15965 WP_187704184.1 3122839..3123525(-) (comFC) [Bacillus pumilus strain ONU 554]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATAT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGTCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	100	0.504
comFC/cflB	Streptococcus mitis NCTC 12261	38.428	100	0.386
comFC/cflB	Streptococcus mitis SK321	38.428	100	0.386
comFC/cflB	Streptococcus pneumoniae Rx1	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae D39	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae R6	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae TIGR4	37.555	100	0.377