Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   H9S87_RS15975 Genome accession   NZ_CP060799
Coordinates   3123882..3125261 (-) Length   459 a.a.
NCBI ID   WP_316250400.1    Uniprot ID   -
Organism   Bacillus pumilus strain ONU 554     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3118882..3130261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9S87_RS15940 (H9S87_15940) flgL 3119062..3119973 (-) 912 WP_034660144.1 flagellar hook-associated protein FlgL -
  H9S87_RS15945 (H9S87_15945) flgK 3119983..3121503 (-) 1521 WP_095285727.1 flagellar hook-associated protein FlgK -
  H9S87_RS15950 (H9S87_15950) - 3121519..3122001 (-) 483 WP_034660146.1 flagellar protein FlgN -
  H9S87_RS15955 (H9S87_15955) flgM 3122020..3122283 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  H9S87_RS15960 (H9S87_15960) - 3122363..3122782 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  H9S87_RS15965 (H9S87_15965) comFC 3122839..3123525 (-) 687 WP_187704184.1 ComF family protein Machinery gene
  H9S87_RS15970 (H9S87_15970) - 3123522..3123815 (-) 294 WP_060597398.1 late competence development ComFB family protein -
  H9S87_RS15975 (H9S87_15975) comFA 3123882..3125261 (-) 1380 WP_316250400.1 DEAD/DEAH box helicase Machinery gene
  H9S87_RS15980 (H9S87_15980) - 3125382..3126224 (-) 843 WP_034660152.1 DegV family protein -
  H9S87_RS15985 (H9S87_15985) degU 3126442..3127131 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  H9S87_RS15990 (H9S87_15990) degS 3127196..3128371 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  H9S87_RS15995 (H9S87_15995) - 3128593..3129261 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52657.88 Da        Isoelectric Point: 10.3183

>NTDB_id=478450 H9S87_RS15975 WP_316250400.1 3123882..3125261(-) (comFA) [Bacillus pumilus strain ONU 554]
MNMDKAMELRQQLQSRHLLTAETRCSQSDLDWLEEKGFVIRTPAIERKANGLTCCRCGVSKKRYFAHTPCDMCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIEAIKKKSDLLIWAVCGAGKTEVLFYGIKYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMKRDVSRGQLEAIKIPLRFHKQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRILLFVPSISTMKKVTKVLREHRLNVEGVSADDPDRKQKVQHFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVIFFHFGLTRSMKQAKKHIVKMNDTAAKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=478450 H9S87_RS15975 WP_316250400.1 3123882..3125261(-) (comFA) [Bacillus pumilus strain ONU 554]
TTGAACATGGACAAAGCAATGGAACTAAGGCAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTCACA
GTCCGATTTGGATTGGCTGGAGGAGAAAGGGTTCGTCATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTACTT
GCTGTAGATGTGGTGTATCAAAAAAGCGGTACTTTGCCCACACTCCGTGTGACATGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAACATG
TCATACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGAGCGTCCGAAAAATTGATCGAAGCGATAAAAA
AAAAATCTGACCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTCTTTTACGGAATTAAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACAGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCATT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGCCCTCAAAGGTTCCAAATAGCACCGCTAGTGATCGCCACAACTC
ATCAGTTGATGAGATACAAACATGCATTTGATGTGCTTATTATAGATGAAGTCGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCCTCTAAGAAAAT
GAAAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACAAACAACCGTTACCTGTCCCGT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATCACAAAGAAGAGAAGGATTTTACTTTTTGTTCCTTCTATTTCGACCATGAAGAAGGTAACGAAGGTTCTTAGAGA
ACACCGCTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGACAGGAAACAAAAGGTCCAGCACTTCAGAGATTATAAAT
ACGATGTACTAGTTACAACCACCATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTGCGGAA
TCTACTATCTTTACAGAGAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TATCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACAGCTGCAA
AAGAGTTTTCTGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.084

98.693

0.534