Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J3K87_RS03555 Genome accession   NZ_CP071698
Coordinates   768140..769684 (-) Length   514 a.a.
NCBI ID   WP_005611914.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain SC1810     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 763140..774684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3K87_RS03530 (J3K87_03505) efeO 764023..764835 (+) 813 WP_005607533.1 iron uptake system protein EfeO -
  J3K87_RS03535 (J3K87_03510) efeB 764847..766040 (+) 1194 WP_005614931.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  J3K87_RS03540 (J3K87_03515) - 766051..766671 (+) 621 WP_012262911.1 hypothetical protein -
  J3K87_RS03545 (J3K87_03520) - 766711..767529 (-) 819 WP_012262912.1 PHP domain-containing protein -
  J3K87_RS03550 (J3K87_03525) - 767533..768123 (-) 591 WP_005611913.1 hypothetical protein -
  J3K87_RS03555 (J3K87_03530) sbcB 768140..769684 (-) 1545 WP_005611914.1 exodeoxyribonuclease I Machinery gene
  J3K87_RS03560 (J3K87_03535) - 769926..771332 (-) 1407 WP_005614935.1 chloride channel protein -
  J3K87_RS03565 (J3K87_03540) asnS 771540..772943 (+) 1404 WP_005600855.1 asparagine--tRNA ligase -
  J3K87_RS03570 (J3K87_03545) epmB 773047..774048 (-) 1002 WP_252590621.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58677.91 Da        Isoelectric Point: 5.7736

>NTDB_id=478450 J3K87_RS03555 WP_005611914.1 768140..769684(-) (sbcB) [Actinobacillus pleuropneumoniae strain SC1810]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSVQFAEAIDILFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANEQNEQLVSALNQVAEQRMNKAAKLEMLKALIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=478450 J3K87_RS03555 WP_005611914.1 768140..769684(-) (sbcB) [Actinobacillus pleuropneumoniae strain SC1810]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCTGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATCCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTATGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGATGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAAAATCGTGGTAAGAAAGAAATTG
AGAAAATGATTGATACCGGTGAAATGACTCCGTTGGTACACGTTTCCGGTATGTTTGGCAACGCACGTGCTAATACCGCT
TGGATTGCACCGATAGCATGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTGCATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAAGCGAATAAAAGTTTAGTGCGCGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAGCCTTCTGCGAATGTGGAAACCACGCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGGCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAGTTTGCCGATGAACGA
GTAGAAGCGTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGTACAATTTGCCGAAGCGATTGATATCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGAACAAAATGAACAGTTGGTTTCAGCCTTAAACCAAGTGGCGGAACAGAGGATGAATAAAGCTGCGAAGTTGGA
AATGCTAAAGGCATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

54.176

90.856

0.492