Detailed information NTG0478452

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: H9S87_RS15990
• Genome accession: NZ_CP060799
• Coordinates: 3127196..3128371 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain ONU 554
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3122196..3133371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9S87_RS15960 (H9S87_15960)	-	3122363..3122782 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
H9S87_RS15965 (H9S87_15965)	comFC	3122839..3123525 (-)	687	WP_187704184.1	ComF family protein	Machinery gene
H9S87_RS15970 (H9S87_15970)	-	3123522..3123815 (-)	294	WP_060597398.1	late competence development ComFB family protein	-
H9S87_RS15975 (H9S87_15975)	comFA	3123882..3125261 (-)	1380	WP_316250400.1	DEAD/DEAH box helicase	Machinery gene
H9S87_RS15980 (H9S87_15980)	-	3125382..3126224 (-)	843	WP_034660152.1	DegV family protein	-
H9S87_RS15985 (H9S87_15985)	degU	3126442..3127131 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
H9S87_RS15990 (H9S87_15990)	degS	3127196..3128371 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
H9S87_RS15995 (H9S87_15995)	-	3128593..3129261 (+)	669	WP_012011434.1	YigZ family protein	-
H9S87_RS16000 (H9S87_16000)	-	3129246..3130337 (+)	1092	WP_034660153.1	LCP family protein	-
H9S87_RS16005 (H9S87_16005)	-	3130373..3131440 (-)	1068	WP_034660156.1	glycosyltransferase family 4 protein	-
H9S87_RS16010 (H9S87_16010)	-	3131575..3132765 (-)	1191	WP_034660717.1	glycosyltransferase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=478452 H9S87_RS15990 WP_003213166.1 3127196..3128371(-) (degS) [Bacillus pumilus strain ONU 554]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=478452 H9S87_RS15990 WP_003213166.1 3127196..3128371(-) (degS) [Bacillus pumilus strain ONU 554]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTCGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACCATGAT
CCAGCAACGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGTCAAGTTGGCGTGTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTGTCCCGGGA
AATTCATGACGGTCCGGCCCAGATGCTGGCAAACGTGATGATGCGTTCCGAATTAATTGAACGGATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATTACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841