Detailed information NTG0478017

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: H9L16_RS08055
• Genome accession: NZ_CP060719
• Coordinates: 1755584..1756852 (-)
• Length: 422 a.a.
• NCBI ID: WP_187551213.1
• Uniprot ID: A0A7G9SLI4
• Organism: Thermomonas carbonis strain KCTC 42013
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1750584..1761852

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9L16_RS08040 (H9L16_08040)	-	1752994..1753962 (+)	969	WP_187551207.1	Nudix family hydrolase	-
H9L16_RS08045 (H9L16_08045)	coaE	1753959..1754564 (-)	606	WP_187551209.1	dephospho-CoA kinase	-
H9L16_RS08050 (H9L16_08050)	-	1754689..1755552 (-)	864	WP_187551211.1	A24 family peptidase	-
H9L16_RS08055 (H9L16_08055)	pilC	1755584..1756852 (-)	1269	WP_187551213.1	type II secretion system F family protein	Machinery gene
H9L16_RS08060 (H9L16_08060)	pilB	1756863..1758587 (-)	1725	WP_187551214.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H9L16_RS08065 (H9L16_08065)	-	1758621..1761686 (-)	3066	WP_187551217.1	fused MFS/spermidine synthase	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46091.72 Da
• Isoelectric Point: 10.2312

>NTDB_id=478017 H9L16_RS08055 WP_187551213.1 1755584..1756852(-) (pilC) [Thermomonas carbonis strain KCTC 42013]
MSARRAAISKARTQAESRRLNPMVEFVWQGRDKRGVVMKGEQTAKNANLLRAELRKQGITPTVVKAKPKPFFGGATKKIG
PRDIAIFSRQLATMMKSGVPIVMALEIIGSGNKNPAMKKMVLGVRNDIEGGASIYEALSQYPVQFDELYRNLVRAGESSG
VLETVLETIAVYKENIESIKGKIKKALFYPAAVIAVAIIVCGVLMVFVVPTFKETFISFGADLPAFTTLVFGISDQFVKW
WWLIAIIAAGAFAAFMFFYKRSVPLQHLVDRLLLKLPVIGKVLNDSAIARFARTLAVTFRAGVPLVEALDNVAGATGNTV
YSKAVMRMKEDVAVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDNMLLKVAEFYEEEVSNAVDALSSLIEPMVMVIIG
GLVGSIVIAMYLPIFKLAMTVM

Nucleotide

• Length: 1269 bp

>NTDB_id=478017 H9L16_RS08055 WP_187551213.1 1755584..1756852(-) (pilC) [Thermomonas carbonis strain KCTC 42013]
ATGTCCGCACGCAGAGCCGCCATCAGCAAGGCCCGGACCCAAGCCGAGTCCCGCCGCCTGAACCCGATGGTCGAATTCGT
CTGGCAGGGCCGCGACAAGCGCGGCGTGGTCATGAAGGGCGAGCAGACGGCGAAGAACGCCAACCTATTGCGCGCCGAGC
TCCGCAAGCAGGGCATCACCCCGACCGTGGTCAAGGCCAAGCCGAAACCCTTCTTCGGAGGCGCGACCAAGAAGATCGGC
CCGCGTGACATCGCCATCTTCAGTCGCCAGCTGGCAACGATGATGAAGTCCGGCGTGCCGATCGTGATGGCGCTGGAAAT
CATCGGCAGCGGCAACAAGAACCCGGCGATGAAGAAGATGGTTCTCGGCGTGAGGAACGACATCGAGGGCGGTGCCTCCA
TCTACGAAGCGCTCAGCCAATACCCGGTGCAGTTCGACGAGCTCTATCGCAACCTGGTGCGCGCAGGCGAATCCTCCGGC
GTGCTGGAGACAGTGTTGGAGACCATCGCGGTCTACAAGGAAAATATCGAGTCGATCAAGGGCAAGATCAAGAAGGCCTT
GTTCTACCCGGCCGCCGTGATCGCGGTGGCGATCATCGTCTGCGGTGTCCTCATGGTCTTCGTGGTCCCGACCTTCAAGG
AGACCTTCATCAGCTTCGGAGCGGATCTGCCGGCTTTCACTACTTTGGTGTTCGGCATATCGGATCAGTTCGTGAAATGG
TGGTGGCTGATCGCCATCATTGCGGCAGGGGCCTTCGCCGCGTTCATGTTCTTCTACAAGCGCTCGGTGCCTCTGCAGCA
TCTTGTCGACCGACTGTTGTTGAAGCTCCCCGTCATCGGCAAGGTGCTCAATGACTCGGCGATTGCACGCTTCGCACGTA
CCTTGGCGGTGACATTCCGTGCCGGCGTGCCGCTGGTGGAAGCGCTGGACAACGTGGCCGGTGCCACTGGCAACACGGTC
TACAGCAAGGCGGTGATGCGGATGAAGGAAGACGTGGCCGTGGGTTACCCGGTCAACGTGGCGATGAAGCAGGTCAACCT
GTTCCCGCACATGGTGGTGCAGATGACCGCGATCGGCGAGGAAGCCGGTGCGCTCGACAACATGTTGCTGAAAGTGGCCG
AGTTCTACGAGGAAGAAGTCAGCAATGCGGTCGATGCGCTGTCCAGCCTGATCGAGCCGATGGTGATGGTGATCATCGGT
GGCTTGGTGGGCTCGATCGTGATCGCGATGTACCTGCCGATCTTCAAGCTCGCCATGACGGTGATGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (291-413)

• Type II secretion system (T2SS), protein F (T2SSF) (87-210)

3D structure

• AlphaFold DB: A0A7G9SLI4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baylyi ADP1	51.478	96.209	0.495
pilC	Acinetobacter baumannii D1279779	50.864	95.972	0.488
pilC	Legionella pneumophila strain ERS1305867	51	94.787	0.483
pilC	Pseudomonas stutzeri DSM 10701	51.01	93.839	0.479
pilG	Neisseria gonorrhoeae MS11	43	94.787	0.408
pilG	Neisseria meningitidis 44/76-A	42.75	94.787	0.405
pilC	Vibrio cholerae strain A1552	38.155	95.024	0.363