Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   H7786_RS03310 Genome accession   NZ_CP060649
Coordinates   631122..631301 (+) Length   59 a.a.
NCBI ID   WP_030126037.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY270     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 587239..634645 631122..631301 within 0


Gene organization within MGE regions


Location: 587239..634645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7786_RS03045 (H7786_03085) ftsE 588238..588930 (+) 693 WP_002985455.1 cell division ATP-binding protein FtsE -
  H7786_RS03050 (H7786_03090) ftsX 588923..589852 (+) 930 WP_002990498.1 permease-like cell division protein FtsX -
  H7786_RS03055 (H7786_03095) - 590162..590797 (-) 636 WP_002985449.1 MBL fold metallo-hydrolase -
  H7786_RS03060 (H7786_03100) - 591028..591792 (+) 765 WP_002993974.1 (S)-acetoin forming diacetyl reductase -
  H7786_RS03065 (H7786_03105) - 591942..594401 (+) 2460 WP_032465485.1 bifunctional DnaQ family exonuclease/ATP-dependent helicase -
  H7786_RS03070 (H7786_03110) - 594736..595929 (+) 1194 WP_002985439.1 pyridoxal phosphate-dependent aminotransferase -
  H7786_RS03075 (H7786_03115) asnS 595950..597296 (+) 1347 WP_002985437.1 asparagine--tRNA ligase -
  H7786_RS03080 (H7786_03120) rapZ 597710..598600 (+) 891 WP_002985434.1 RNase adapter RapZ -
  H7786_RS03085 (H7786_03125) - 598597..599574 (+) 978 WP_011017561.1 YvcK family protein -
  H7786_RS03090 (H7786_03130) whiA 599571..600482 (+) 912 WP_011054317.1 DNA-binding protein WhiA -
  H7786_RS03095 (H7786_03135) - 600616..602013 (+) 1398 WP_030126061.1 C69 family dipeptidase -
  H7786_RS03100 (H7786_03140) - 602165..603712 (+) 1548 WP_030126060.1 zinc ABC transporter substrate-binding protein AdcA -
  H7786_RS03105 (H7786_03145) - 603859..604581 (+) 723 WP_030126059.1 GntR family transcriptional regulator -
  H7786_RS03110 (H7786_03150) - 604600..605799 (+) 1200 WP_030126058.1 SIS domain-containing protein -
  H7786_RS03115 (H7786_03155) - 605896..606156 (-) 261 WP_002985307.1 type B 50S ribosomal protein L31 -
  H7786_RS03120 (H7786_03160) - 606271..607212 (-) 942 WP_011528442.1 DHH family phosphoesterase -
  H7786_RS03125 (H7786_03165) - 607606..608055 (+) 450 WP_002985303.1 flavodoxin -
  H7786_RS03130 (H7786_03170) - 608231..608515 (+) 285 WP_030126057.1 chorismate mutase -
  H7786_RS03135 (H7786_03175) - 608508..609770 (+) 1263 WP_030126056.1 voltage-gated chloride channel family protein -
  H7786_RS03140 (H7786_03180) rplS 609885..610232 (+) 348 WP_002985298.1 50S ribosomal protein L19 -
  H7786_RS03150 (H7786_03190) - 610596..611683 (-) 1088 Protein_582 tyrosine-type recombinase/integrase -
  H7786_RS03155 (H7786_03195) - 611802..612323 (-) 522 WP_023612337.1 hypothetical protein -
  H7786_RS03160 (H7786_03200) - 612334..612711 (-) 378 WP_030126053.1 ImmA/IrrE family metallo-endopeptidase -
  H7786_RS03165 (H7786_03205) - 612695..613054 (-) 360 WP_023611288.1 helix-turn-helix domain-containing protein -
  H7786_RS03170 (H7786_03210) - 613242..613460 (+) 219 WP_023612341.1 helix-turn-helix domain-containing protein -
  H7786_RS03175 (H7786_03215) - 613560..613790 (+) 231 WP_023612302.1 hypothetical protein -
  H7786_RS03180 (H7786_03220) - 613774..613917 (+) 144 WP_164492191.1 hypothetical protein -
  H7786_RS03185 (H7786_03225) - 613927..614145 (+) 219 WP_023612348.1 hypothetical protein -
  H7786_RS03190 (H7786_03230) - 614147..614389 (+) 243 WP_003056170.1 hypothetical protein -
  H7786_RS03195 (H7786_03235) - 614373..615692 (+) 1320 WP_030126052.1 AAA family ATPase -
  H7786_RS03200 (H7786_03240) - 615707..616801 (+) 1095 WP_030126051.1 ATP-binding protein -
  H7786_RS03205 (H7786_03245) - 616909..617424 (+) 516 Protein_593 hypothetical protein -
  H7786_RS03210 (H7786_03250) - 617446..618081 (+) 636 WP_030126049.1 hypothetical protein -
  H7786_RS03215 (H7786_03255) - 618081..619412 (+) 1332 WP_030126048.1 DEAD/DEAH box helicase -
  H7786_RS03220 (H7786_03260) - 619422..619925 (+) 504 WP_228646645.1 hypothetical protein -
  H7786_RS03225 (H7786_03265) - 620041..622302 (+) 2262 WP_030126047.1 AAA family ATPase -
  H7786_RS03230 (H7786_03270) - 622681..622914 (+) 234 WP_030126046.1 crAss001_48 related protein -
  H7786_RS03235 (H7786_03275) - 622904..623302 (+) 399 WP_030126045.1 RusA family crossover junction endodeoxyribonuclease -
  H7786_RS03240 (H7786_03280) - 623299..623523 (+) 225 WP_030126044.1 hypothetical protein -
  H7786_RS03245 (H7786_03285) - 623526..623699 (+) 174 WP_200868818.1 hypothetical protein -
  H7786_RS03250 (H7786_03290) - 623708..623992 (+) 285 WP_011018137.1 DUF3310 domain-containing protein -
  H7786_RS03255 (H7786_03295) - 623989..624402 (+) 414 WP_030126043.1 YopX family protein -
  H7786_RS03260 (H7786_03300) - 624399..624683 (+) 285 WP_030126042.1 hypothetical protein -
  H7786_RS03265 (H7786_03305) - 624687..625172 (+) 486 WP_228646647.1 class I SAM-dependent methyltransferase -
  H7786_RS03270 (H7786_03310) - 625174..625812 (+) 639 WP_030126040.1 N-6 DNA methylase -
  H7786_RS03275 (H7786_03315) - 626185..626622 (+) 438 WP_021340586.1 DUF1492 domain-containing protein -
  H7786_RS03280 (H7786_03320) terS 627227..627940 (+) 714 WP_030126039.1 phage terminase small subunit -
  H7786_RS03285 (H7786_03325) - 627943..628185 (+) 243 Protein_609 PBSX family phage terminase large subunit -
  H7786_RS03290 (H7786_03330) - 628174..628572 (+) 399 Protein_610 SH3 domain-containing protein -
  H7786_RS03295 (H7786_03335) - 628937..629449 (+) 513 WP_012767010.1 PBECR4 domain-containing protein -
  H7786_RS03300 (H7786_03340) - 629638..629838 (+) 201 WP_011888781.1 CsbD family protein -
  H7786_RS03305 (H7786_03345) - 629900..630889 (-) 990 WP_050443212.1 DNA/RNA non-specific endonuclease -
  H7786_RS03310 (H7786_03350) prx 631122..631301 (+) 180 WP_030126037.1 hypothetical protein Regulator
  H7786_RS09150 (H7786_03355) - 631479..631754 (-) 276 Protein_615 tyrosine-type recombinase/integrase -
  H7786_RS03320 - 631759..632029 (+) 271 Protein_616 rod shape-determining protein RodA -
  H7786_RS03325 (H7786_03360) - 632132..632692 (+) 561 WP_002990461.1 HAD-IA family hydrolase -
  H7786_RS03330 (H7786_03365) gyrB 632693..634645 (+) 1953 WP_002994058.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence


Protein


Download         Length: 59 a.a.        Molecular weight: 6883.90 Da        Isoelectric Point: 4.3010

>NTDB_id=477528 H7786_RS03310 WP_030126037.1 631122..631301(+) (prx) [Streptococcus pyogenes strain TSPY270]
MLTYDEFKQAIDDGYITGHTVAIVRKNGQIFDYALPGEKVRPWEVVIEERVAEVLMELW

Nucleotide


Download         Length: 180 bp        

>NTDB_id=477528 H7786_RS03310 WP_030126037.1 631122..631301(+) (prx) [Streptococcus pyogenes strain TSPY270]
ATGCTAACATACGATGAGTTTAAGCAAGCTATTGATGACGGATATATCACAGGACACACAGTGGCGATCGTGCGCAAAAA
CGGACAGATTTTTGATTATGCGTTGCCTGGTGAGAAAGTCAGACCATGGGAGGTTGTGATCGAGGAGAGGGTGGCGGAGG
TGTTGATGGAATTGTGGTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

82.759

98.305

0.814

  prx Streptococcus pyogenes MGAS315

79.31

98.305

0.78

  prx Streptococcus pyogenes MGAS8232

75.862

98.305

0.746

  prx Streptococcus pyogenes MGAS315

72.414

98.305

0.712

  prx Streptococcus pyogenes MGAS315

90.476

71.186

0.644

  prx Streptococcus pyogenes MGAS315

82.927

69.492

0.576

  prx Streptococcus pyogenes MGAS315

78.049

69.492

0.542