Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   J1G54_RS12110 Genome accession   NZ_CP071491
Coordinates   2423722..2425803 (-) Length   693 a.a.
NCBI ID   WP_021114317.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2418722..2430803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS12090 (J1G54_12090) rbsK 2419222..2420142 (+) 921 WP_207342754.1 ribokinase -
  J1G54_RS12095 (J1G54_12095) glnA 2420462..2421889 (+) 1428 WP_010786482.1 type I glutamate--ammonia ligase -
  J1G54_RS12100 (J1G54_12100) - 2421956..2422925 (-) 970 Protein_2353 transposase -
  J1G54_RS12105 (J1G54_12105) - 2423031..2423438 (-) 408 WP_021114316.1 YgiW/YdeI family stress tolerance OB fold protein -
  J1G54_RS12110 (J1G54_12110) recG 2423722..2425803 (-) 2082 WP_021114317.1 ATP-dependent DNA helicase RecG Machinery gene
  J1G54_RS12115 (J1G54_12115) - 2425916..2427121 (-) 1206 WP_160413964.1 cupin domain-containing protein -
  J1G54_RS12120 (J1G54_12120) - 2427222..2427986 (-) 765 WP_207342755.1 BPL-N domain-containing protein -
  J1G54_RS12125 (J1G54_12125) - 2428070..2428636 (+) 567 WP_021112882.1 biotin transporter BioY -
  J1G54_RS12130 (J1G54_12130) - 2428767..2429576 (-) 810 WP_021119285.1 Cof-type HAD-IIB family hydrolase -
  J1G54_RS12135 (J1G54_12135) - 2429700..2430377 (+) 678 WP_021115350.1 phosphoribosyltransferase family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77273.41 Da        Isoelectric Point: 8.4458

>NTDB_id=477364 J1G54_RS12110 WP_021114317.1 2423722..2425803(-) (recG) [Glaesserella parasuis strain GHP1807]
MSQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQHALPDLRIGLVHGRMKPQEKQAIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQNYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=477364 J1G54_RS12110 WP_021114317.1 2423722..2425803(-) (recG) [Glaesserella parasuis strain GHP1807]
ATGAGCCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAATGTGCAAGATCTGCTGTTCCATTTGCCTATGCGCTATGAAGACCGTACTCGGATCACGCCGATTG
CGGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTGCAATTTGGTCGTCGTCCGATT
TTAAGTACCACAATTTCTGACGGCACAAGCAAAATTACCCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCAACTGGCGTAAGAGTGAAAGCCTTTGGCGAGATTAAACGTGGTCGCTTTATGGCAGAAATTCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTAGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCTGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCCTTGCAGTTGTTACATCGACCGCCACCGAGTGTGTCGTCCGAATTGTTAG
ATAAAGGCGAACACCCTGCACAAAAACGGCTGATTTTTGAAGAGCTGTTGGCTCATAATTTGGCGATGCAACAGGTGCGA
ATGGGGGTGCAACAACATTTTGCTGAACCGCTATGTTATCAAACCGATTTAAAACAACGCTTTTTAGCCACTTTGCCGTT
TCAACCGACCAACGCTCAAAGCCGTGTGACTGCGGAGATTGAACAGGATTTGGCAAAACCTTTTCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGCAAAACCCTTGTGGCTGCGTTAGCGGCACTGTTGGCGATTGATAATGGTAAACAGGTG
GCGTTAATGGCACCGACCGAAATTCTCGCCGAGCAACACGCTCACAATTTTGCCAACTGGTTGCGACCTTTTGGGATCGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACAGCTCAGTTGGAAGCGATTAAAAACGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCCTACGCGAGAAAGGGGCTAAGGGCGATGTCTATCCGCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTGGCGATGACCGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCTG
GACGAACACCGATCACGACGGTGGCGATTTCGGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTGTTAGAAGCACAAGCGGCGGCAGCGAT
AGCCGAAGATTTGCAACATGCTTTGCCAGATTTGCGGATTGGGTTGGTTCACGGGCGAATGAAGCCACAGGAAAAACAGG
CAATTATGGCGGAATTTAAGGCGGCAAATATTGATTTGTTGGTGGCAACAACAGTGATCGAAGTCGGCGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGATTGGCACAGTTGCACCAACTGCGTGGGCGTGTTGGACG
TGGAGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCATCTAAACGGTTACAGGTACTGA
GAGATAGCCAAGACGGTTTTGTGATTGCTGAAAAAGATTTGGAAATTCGTGGCCCGGGTGAAGTGTTAGGCACAAAACAG
ACAGGTATGGCGGAGTTCAAAATTGCGAATTTAATGCGAGATCGCAAGATGATCCCATTGGTGCAGAACTACGCCAAACA
GCTAACGTTAAAATATCCTGATACGGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

DEAD/DEAH box helicase (DEAD)

(293-407)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.185

97.403

0.479
  recG Bacillus subtilis subsp. subtilis str. 168

39.794

98.268

0.391
  recG/mmsA Streptococcus pneumoniae R6

39.634

94.661

0.375
  recG/mmsA Streptococcus pneumoniae R36A

39.634

94.661

0.375