Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   H7789_RS01460 Genome accession   NZ_CP060646
Coordinates   277426..277977 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1026     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 272426..282977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7789_RS01460 (H7789_01470) comX/sigX/comX2/sigX2 277426..277977 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  H7789_RS01465 (H7789_01475) truA 278164..278913 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  H7789_RS01470 (H7789_01480) - 278903..279667 (+) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H7789_RS01475 (H7789_01485) - 279657..280127 (+) 471 WP_002988139.1 ECF transporter S component -
  H7789_RS01480 (H7789_01490) - 280141..280701 (+) 561 WP_002995157.1 TIGR01440 family protein -
  H7789_RS01485 (H7789_01495) - 280766..281611 (-) 846 WP_228628237.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=477354 H7789_RS01460 WP_010921894.1 277426..277977(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain TSPY1026]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=477354 H7789_RS01460 WP_010921894.1 277426..277977(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain TSPY1026]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGTGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAAGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.