Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   H7790_RS08020 Genome accession   NZ_CP060645
Coordinates   1611331..1611882 (-) Length   183 a.a.
NCBI ID   WP_111688228.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1349     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606331..1616882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7790_RS07995 (H7790_08015) - 1607699..1608544 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  H7790_RS08000 (H7790_08020) - 1608609..1609169 (-) 561 WP_168391531.1 TIGR01440 family protein -
  H7790_RS08005 (H7790_08025) - 1609183..1609653 (-) 471 WP_115230384.1 ECF transporter S component -
  H7790_RS08010 (H7790_08030) - 1609643..1610407 (-) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H7790_RS08015 (H7790_08035) truA 1610397..1611146 (-) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  H7790_RS08020 (H7790_08040) comX/sigX/comX2/sigX2 1611331..1611882 (-) 552 WP_111688228.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22307.16 Da        Isoelectric Point: 10.0375

>NTDB_id=477328 H7790_RS08020 WP_111688228.1 1611331..1611882(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain TSPY1349]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNLQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=477328 H7790_RS08020 WP_111688228.1 1611331..1611882(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain TSPY1349]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTTGCAAGAGCGTATGCAATTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAAGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.