Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   J1G53_RS05440 Genome accession   NZ_CP071490
Coordinates   1144652..1146949 (+) Length   765 a.a.
NCBI ID   WP_207342609.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139652..1151949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS05420 (J1G53_05420) galU 1139742..1140629 (-) 888 WP_075592281.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J1G53_RS05425 (J1G53_05425) csrA 1140809..1140994 (-) 186 WP_005711547.1 carbon storage regulator CsrA -
  J1G53_RS05430 (J1G53_05430) alaS 1141058..1143685 (-) 2628 WP_010786902.1 alanine--tRNA ligase -
  J1G53_RS05435 (J1G53_05435) uspA 1143912..1144337 (-) 426 WP_005711551.1 universal stress protein UspA -
  J1G53_RS05440 (J1G53_05440) rec2 1144652..1146949 (+) 2298 WP_207342609.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J1G53_RS05445 (J1G53_05445) - 1147095..1147391 (-) 297 WP_005711556.1 YciI family protein -
  J1G53_RS05450 (J1G53_05450) yciA 1147403..1147843 (-) 441 WP_010786900.1 acyl-CoA thioester hydrolase YciA -
  J1G53_RS05455 (J1G53_05455) - 1147827..1148390 (-) 564 WP_005711560.1 septation protein A -
  J1G53_RS05460 (J1G53_05460) - 1148399..1149127 (-) 729 WP_075620758.1 hypothetical protein -
  J1G53_RS05465 (J1G53_05465) yfbV 1149306..1149740 (+) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  J1G53_RS05470 (J1G53_05470) tadA 1149722..1150258 (-) 537 WP_075620757.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 87083.82 Da        Isoelectric Point: 9.3775

>NTDB_id=477281 J1G53_RS05440 WP_207342609.1 1144652..1146949(+) (rec2) [Glaesserella parasuis strain GHP1808]
MSIDRVCLMLFFSLLPLIVLPASWLGYVMVFSLALALWGVWRGKLGILLLGGVLAVSYAQIIQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELALKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWAVKAGQWL
LLRFRCLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLILIGLYGVFQQRFSLYYGLAT
VALPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIGGNQWQFSTIHLEAIYPLQLSERAKNEHSCVLRVSIG
KYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHTQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGQMNKLSFVAR

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=477281 J1G53_RS05440 WP_207342609.1 1144652..1146949(+) (rec2) [Glaesserella parasuis strain GHP1808]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCAGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGATGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATACAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCAGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGCATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGGCGGTGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTGTCTAAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCGCTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTACTATTAGTCGTCTTTGATCCGCTGACGTTACTG
TCTGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGCCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAATTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGCACATCACCTTTCGCTTTATTAGCCAATTTGATCATTGTTCCACTTTAT
AGTTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATTTATTGATTTTAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTAGCATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCGCTTGTAAAATGGGTGAA
TTTCGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCCATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGCACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTAGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGGAGGCAATCAGTGGCAGTTCAGCACAATAC
ACCTTGAAGCGATTTATCCTTTGCAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
AAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACCTTGTTAGCTCACACACAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAGGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGCAAATGAATAAGTTGAGTTTTGTAGCCAGATGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-685)

Competence protein (Competence)

(191-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.176

95.556

0.393