Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J1G53_RS03290 Genome accession   NZ_CP071490
Coordinates   680381..681931 (+) Length   516 a.a.
NCBI ID   WP_075592516.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 675381..686931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS03265 (J1G53_03265) dnaX 675823..677841 (+) 2019 WP_075592518.1 DNA polymerase III subunit gamma/tau -
  J1G53_RS03270 (J1G53_03270) - 677847..678743 (+) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  J1G53_RS03275 (J1G53_03275) - 678765..679520 (+) 756 WP_075592517.1 ABC transporter permease -
  J1G53_RS03280 (J1G53_03280) - 679637..679891 (+) 255 WP_010785924.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  J1G53_RS03285 (J1G53_03285) - 679888..680172 (+) 285 WP_016528228.1 type II toxin-antitoxin system RelE family toxin -
  J1G53_RS03290 (J1G53_03290) sbcB 680381..681931 (+) 1551 WP_075592516.1 exodeoxyribonuclease I Machinery gene
  J1G53_RS03295 (J1G53_03295) - 682014..682973 (+) 960 WP_075592515.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  J1G53_RS03300 (J1G53_03300) - 683122..683943 (+) 822 WP_112063032.1 PHP domain-containing protein -
  J1G53_RS03305 (J1G53_03305) ilvN 684049..684540 (-) 492 WP_160440681.1 acetolactate synthase small subunit -
  J1G53_RS03310 (J1G53_03310) - 684533..686254 (-) 1722 WP_207342550.1 acetolactate synthase 3 large subunit -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58837.00 Da        Isoelectric Point: 5.5315

>NTDB_id=477273 J1G53_RS03290 WP_075592516.1 680381..681931(+) (sbcB) [Glaesserella parasuis strain GHP1808]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRLACLENLKRLKSQKNLVREKVLDIFSEERNYPTSNNIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPR
IEPLLFHYRARHYAETLTRAEQVRWQKYCYQQLEAKAEAFEQALDLLSAQYHDNSEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=477273 J1G53_RS03290 WP_075592516.1 680381..681931(+) (sbcB) [Glaesserella parasuis strain GHP1808]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTGATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATTGATCGTCTAGCCTGTTTAGAAAATTTAAAACGGCTAAAATCACAAAAAAACCTTGTGCGAGAAAAGGTTCTCGA
TATTTTTTCTGAAGAAAGAAACTATCCAACGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCAATCTTACGAAGCCTAAAACCTGAAGAGCTTGCACATCACGGTTTGAAATTTAGCGATCCTAGA
ATTGAGCCTCTGCTTTTCCATTATCGAGCAAGACACTACGCAGAAACCTTAACACGGGCAGAACAAGTACGTTGGCAAAA
GTATTGCTATCAACAACTTGAAGCAAAAGCAGAGGCCTTTGAACAAGCACTTGATCTGTTATCGGCTCAATATCACGATA
ATTCTGAAAAGATAAAATTATTGACGGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAATCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-469)

Exonuclease (RNase_T)

(8-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512